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The map label for this gene is 126452755

Identifier: 126452755

GI number: 126452755

Start: 3889944

End: 3890843

Strand: Direct

Name: 126452755

Synonym: BURPS1106A_3990

Alternate gene names: NA

Gene position: 3889944-3890843 (Clockwise)

Preceding gene: 126455041

Following gene: 126454610

Centisome position: 97.53

GC content: 69.22

Gene sequence:

>900_bases
ATGAGCGAAGCACCCCACGGAGCCCCCATCAAAACCCCCGGGCAACTCATCGCAGTTGTCATCGCCTCATTCGTGATCCC
CATCGCGATCATCGTCCTGTTCGCCACCTACGCCAACCACGCGTTCCGCACCGGCGCCGGCACCGACGGCCTCTCCGACG
AAGCCGTCGCAAAACGCATCGCCCCGCTCGCGCAGGTCGATATCAAGGACGCCAACGCACCGCGCGTCTACAAAACCGGT
GAGGAAGTCTACAAGGCCGTCTGCGTCACCTGTCACGGCACCGGCGCCGCCGGGGCGCCGAAATTCGGCGACGCCGCCGC
CTGGGCGCCGCGCATCGCAGCCGGCTATGACGAAGTCCTGCATCTCGCGCTGACCGGCAAGGGCGCGATGCCCCCGCGCG
GCGGCACGAACCCCGACGACTATAGCGATTACGAAATCGCGCGCGCAGTCGTCTATATGGCGAATCAGGGCGGCGCGAAG
TTCGCCGAGCCGGCCCAGCCCGCCGCGAACGCCGCGCCCGCATCGGGCGCCGCCGCCGCATCCGCGCCGGGCGCATCCGA
TGCGGCGGCCAACTCGCAGGCCGCCGCCGCAATGGCCGCAATCGCCGCGCTGCCGAAAGCCGGCGAAGCACCCGCGGCCG
GCGCGAACGCGGAAAGCTCGGCGTCGGCCGGCAAGGCGCTGTACGAATCGACGTGCCAGGCCTGCCATGCCACCGGCGTG
CTGAACGCGCCGAAATTCGGCAACAAGGCCGACTGGGCCCCGCGCCTGAAGGACTCGATGGATACCGTCTACAACTTCGC
GCTGCACGGCAAGGGCGCGATGCCGCCGAAGGGCGGCTCGAACGCGTCGGATGCCGACGTGAAGGCGGCCGTCGACTATA
TGGTCAACGCCGCCAAGTAG

Upstream 100 bases:

>100_bases
CGCCGCCATGTAAACGTTCCGTCTATAATCGTCCGAGCTTCACCCGCAGCCATTCATTGCCGTACCGCTCACAATTCCTA
TTCATGGAGACGAGGCAAGC

Downstream 100 bases:

>100_bases
CCCGCCCCGCCCACACGGCGAACGAAAAACCCCCGCGCCGCGCGAGCAATGCGGGGGTTTTCGCTTTGCCGCAGCCGGCC
ATCGAAAAACAGCCGCGCAT

Product: cytochrome c family protein

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRIAPLAQVDIKDANAPRVYKTG
EEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVLHLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAK
FAEPAQPAANAAPASGAAAASAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGV
LNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK

Sequences:

>Translated_299_residues
MSEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRIAPLAQVDIKDANAPRVYKTG
EEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVLHLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAK
FAEPAQPAANAAPASGAAAASAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGV
LNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK
>Mature_298_residues
SEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRIAPLAQVDIKDANAPRVYKTGE
EVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVLHLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAKF
AEPAQPAANAAPASGAAAASAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGVL
NAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 29879; Mature: 29747

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH
APLAQVDIKDANAPRVYKTGEEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVL
HHHHHEECCCCCCCCEECCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCHHHHE
HLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAKFAEPAQPAANAAPASGAAAA
EEHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGV
CCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
LNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH
APLAQVDIKDANAPRVYKTGEEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVL
HHHHHEECCCCCCCCEECCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCHHHHE
HLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAKFAEPAQPAANAAPASGAAAA
EEHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGV
CCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
LNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]