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The map label for this gene is hfq [H]

Identifier: 126452708

GI number: 126452708

Start: 2211576

End: 2211815

Strand: Reverse

Name: hfq [H]

Synonym: BURPS1106A_2222

Alternate gene names: 126452708

Gene position: 2211815-2211576 (Counterclockwise)

Preceding gene: 126454834

Following gene: 126451860

Centisome position: 55.46

GC content: 54.17

Gene sequence:

>240_bases
ATGAGCAACAAAGGGCAATTGTTACAAGACCCGTTTTTGAACGCACTGCGTAAAGAGCACGTGCCGGTTTCGATCTATCT
CGTGAACGGCATCAAGCTCCAAGGGAACATCGAATCGTTCGACCAGTACGTCGTGTTGCTCCGGAACACGGTTACCCAGA
TGGTTTACAAGCACGCCATTTCGACGGTCGTGCCGGCGCGTCCGGTGAACTTCCACCCGGATGCGGAAGCAGCGTCCTAA

Upstream 100 bases:

>100_bases
GGGCGGGGTGGACAAAATCGGCTATAGTGTAGCGATTGGCGGCGGATCTCTTTTTCTTCGCCCCAATCTAGATCAACCTG
CAAAAAAGATGGAGTACGCC

Downstream 100 bases:

>100_bases
CCCATTGCCGCGGCTGGCTTGCGTCGCCGTCGGCAGCCGATGCCAGCCGCCTTATCTTGACCTCCGATAATTTGATCAAC
GCAGCGTTAGTCGGCATCGA

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEAAS

Sequences:

>Translated_79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEAAS
>Mature_78_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEAAS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=71, Percent_Identity=81.6901408450704, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8833; Mature: 8702

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDAEAAS
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDAEAAS
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA