Click here to switch to the map view.

The map label for this gene is yafE [H]

Identifier: 126452650

GI number: 126452650

Start: 1054223

End: 1054978

Strand: Direct

Name: yafE [H]

Synonym: BURPS1106A_1074

Alternate gene names: 126452650

Gene position: 1054223-1054978 (Clockwise)

Preceding gene: 126452262

Following gene: 126454870

Centisome position: 26.43

GC content: 72.09

Gene sequence:

>756_bases
ATGAAGCATCACGACCGGGTGGCCGACGCGTTCGGCACGACCGCATCCGCCTATCTGACGAGCGCCGTTCATGCGACGGG
CGCGGATCTGGACACGTTCGCCGCGGAGATCGGCGCGACGCCGGGCGCGCGCGTGCTGGATCTCGGCTGCGGCGCGGGCC
ATGCGAGCTTTGCCGCCGCGCGCGGCGGCGCGCACGAGGTGATCGCGTACGACCTCGCGCCGCAGATGCTCGCGACGGTC
GAGGCGGCGGCGCGCGAGCGCGGCCTGTCGAACGTGCGAATCGAGCAGGGCGCGGCCGAGCGGCTGCCGTTCGCCGATGC
GTCGTTCGACTGGATCGTGAGCCGGATGAGCGCGCACCATTGGCACGACGTGCCGCGCGCGCTCGCCGAAGCGCGGCGCG
TGCTGAAGCCTGGCGGCCGGGTGCTGTTCGTCGACGTCGCCGGCGCCGATCACCCGCTCGTCGACACTCATCTGCAGGCG
GTCGAGGTGTTGCGCGACGCGTCGCACGTGCGTGATTACCGCGTGGACGAATGGCTCGCGTTCTTCGCGCAGGCGGGGTT
CGCCGCGCGGGTGCGGGAGCGCTGGCGCCTGTCGATCGGGTTCGACGGCTGGGTCGCGCGGATGAGGACACCCGACGTGC
GCGCGCATGCGATCCGCGCGCTGTGGGCGGACGCGCCCGACGAGGTGCGCGCGTATTTCGACGTGCAGCCGGACGGCTCG
TTCAAGCTCGATGTGGTGATGATCGACGCGCGGTGA

Upstream 100 bases:

>100_bases
TGGCTTGTACCGGTACCTGTCGGGCTCTATTGTAGCGGCTCATGGCGGCCGATGCAGTCGGCCGGCCGCCTCCGATCCCC
ACATGGCAAGGAGCACGCCG

Downstream 100 bases:

>100_bases
CGCGGCGGCGAAGGGCGGCGCGGGCGCGCCGGGCGAAGCCCGCGCCGCGCGGTCGTCCTGCCGTCCTTTCGTCCGGCGGC
ATGGCCGCTCGGGCCGGTCA

Product: UbiE/COQ5 family methlytransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKHHDRVADAFGTTASAYLTSAVHATGADLDTFAAEIGATPGARVLDLGCGAGHASFAAARGGAHEVIAYDLAPQMLATV
EAAARERGLSNVRIEQGAAERLPFADASFDWIVSRMSAHHWHDVPRALAEARRVLKPGGRVLFVDVAGADHPLVDTHLQA
VEVLRDASHVRDYRVDEWLAFFAQAGFAARVRERWRLSIGFDGWVARMRTPDVRAHAIRALWADAPDEVRAYFDVQPDGS
FKLDVVMIDAR

Sequences:

>Translated_251_residues
MKHHDRVADAFGTTASAYLTSAVHATGADLDTFAAEIGATPGARVLDLGCGAGHASFAAARGGAHEVIAYDLAPQMLATV
EAAARERGLSNVRIEQGAAERLPFADASFDWIVSRMSAHHWHDVPRALAEARRVLKPGGRVLFVDVAGADHPLVDTHLQA
VEVLRDASHVRDYRVDEWLAFFAQAGFAARVRERWRLSIGFDGWVARMRTPDVRAHAIRALWADAPDEVRAYFDVQPDGS
FKLDVVMIDAR
>Mature_251_residues
MKHHDRVADAFGTTASAYLTSAVHATGADLDTFAAEIGATPGARVLDLGCGAGHASFAAARGGAHEVIAYDLAPQMLATV
EAAARERGLSNVRIEQGAAERLPFADASFDWIVSRMSAHHWHDVPRALAEARRVLKPGGRVLFVDVAGADHPLVDTHLQA
VEVLRDASHVRDYRVDEWLAFFAQAGFAARVRERWRLSIGFDGWVARMRTPDVRAHAIRALWADAPDEVRAYFDVQPDGS
FKLDVVMIDAR

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786404, Length=202, Percent_Identity=48.019801980198, Blast_Score=186, Evalue=9e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27372; Mature: 27372

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHDRVADAFGTTASAYLTSAVHATGADLDTFAAEIGATPGARVLDLGCGAGHASFAAA
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
RGGAHEVIAYDLAPQMLATVEAAARERGLSNVRIEQGAAERLPFADASFDWIVSRMSAHH
CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCHHHHHHHHHHHHH
WHDVPRALAEARRVLKPGGRVLFVDVAGADHPLVDTHLQAVEVLRDASHVRDYRVDEWLA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFAQAGFAARVRERWRLSIGFDGWVARMRTPDVRAHAIRALWADAPDEVRAYFDVQPDGS
HHHHCCHHHHHHHHHEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCHHHEEEEEECCCCC
FKLDVVMIDAR
EEEEEEEEECC
>Mature Secondary Structure
MKHHDRVADAFGTTASAYLTSAVHATGADLDTFAAEIGATPGARVLDLGCGAGHASFAAA
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
RGGAHEVIAYDLAPQMLATVEAAARERGLSNVRIEQGAAERLPFADASFDWIVSRMSAHH
CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCHHHHHHHHHHHHH
WHDVPRALAEARRVLKPGGRVLFVDVAGADHPLVDTHLQAVEVLRDASHVRDYRVDEWLA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFAQAGFAARVRERWRLSIGFDGWVARMRTPDVRAHAIRALWADAPDEVRAYFDVQPDGS
HHHHCCHHHHHHHHHEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCHHHEEEEEECCCCC
FKLDVVMIDAR
EEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1663890; 9278503 [H]