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The map label for this gene is ydcN [C]

Identifier: 126452632

GI number: 126452632

Start: 3089863

End: 3090450

Strand: Direct

Name: ydcN [C]

Synonym: BURPS1106A_3174

Alternate gene names: 126452632

Gene position: 3089863-3090450 (Clockwise)

Preceding gene: 126451525

Following gene: 126454116

Centisome position: 77.47

GC content: 69.73

Gene sequence:

>588_bases
ATGGACATCAACCAACTGATCGCGCGCCGTGTGCGCGCCCTTCGGGACCTTCGCGGCTACTCGCTCGACGCGCTCGCCGA
GCGCAGCAAGGTGAGCCGCTCGAACATCTCGCTCATCGAACGCGCGCAGAGCAACCCGACCGCCGTCGTGCTCGAGCGGC
TCGCGAACGCGCTCGGCGTGTCGCTGGCGTCGCTGTTCGAGGACGATCGCGCCGCGCGCGCGGCGTCGCCGCTGTCTCGC
GCCACCGAGCAGCCGGTGTGGAAAGATCCGGCGTCGGGCTACGTGCGTCGCAACCTGTCGCCCGCGGTGGCGTCGCCGCT
GCAACTCGTCGAGGTGAAGTTTCCGCCCGGCGGGCGCGTCGCATACGACGGCGGCGAGCGCAACGCCGACGTCCATCAGC
AGATCTGGCTGCTCGAAGGCGAAATGGATATCGCGAGCGGCGACGATACATGGCGCGTCGCGGCTGGCGACTGCCTCGCG
ATGCGTCTCGATCGCCCCGCCGTCTTCTTCAACCCGGGCCGCAAGGCCGCGCGCTATGTCGTCGCGTTCGCCGCGGCGAA
CGCCGTTCGTCCCGGGTGGATCGAATGA

Upstream 100 bases:

>100_bases
CCTCCCCGTTCGGGCCGCGCGCCCCGCACACGCCCGTCGCGCTCGCCCCCCCGCACCGTCAATCTAGTATTCTGGATCTT
TATCCAATATACTGGATCAC

Downstream 100 bases:

>100_bases
GCCATGCGATCGGCGTGCGACGCATCGGGACCGACGAAGCGGCCGCATGCGTCGACGCGCTGTCCGACGTGCTGATCGAT
TGCGTCGAAGGCGGCGCGTC

Product: DNA-binding protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Hth-Type Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MDINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFEDDRAARAASPLSR
ATEQPVWKDPASGYVRRNLSPAVASPLQLVEVKFPPGGRVAYDGGERNADVHQQIWLLEGEMDIASGDDTWRVAAGDCLA
MRLDRPAVFFNPGRKAARYVVAFAAANAVRPGWIE

Sequences:

>Translated_195_residues
MDINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFEDDRAARAASPLSR
ATEQPVWKDPASGYVRRNLSPAVASPLQLVEVKFPPGGRVAYDGGERNADVHQQIWLLEGEMDIASGDDTWRVAAGDCLA
MRLDRPAVFFNPGRKAARYVVAFAAANAVRPGWIE
>Mature_195_residues
MDINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFEDDRAARAASPLSR
ATEQPVWKDPASGYVRRNLSPAVASPLQLVEVKFPPGGRVAYDGGERNADVHQQIWLLEGEMDIASGDDTWRVAAGDCLA
MRLDRPAVFFNPGRKAARYVVAFAAANAVRPGWIE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21309; Mature: 21309

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SLASLFEDDRAARAASPLSRATEQPVWKDPASGYVRRNLSPAVASPLQLVEVKFPPGGRV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHCCEEEEEEECCCCCEE
AYDGGERNADVHQQIWLLEGEMDIASGDDTWRVAAGDCLAMRLDRPAVFFNPGRKAARYV
EECCCCCCCCHHHEEEEEECCEEECCCCCCEEEECCCEEEEEECCCEEEECCCHHHHHHH
VAFAAANAVRPGWIE
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MDINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SLASLFEDDRAARAASPLSRATEQPVWKDPASGYVRRNLSPAVASPLQLVEVKFPPGGRV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHCCEEEEEEECCCCCEE
AYDGGERNADVHQQIWLLEGEMDIASGDDTWRVAAGDCLAMRLDRPAVFFNPGRKAARYV
EECCCCCCCCHHHEEEEEECCEEECCCCCCEEEECCCEEEEEECCCEEEECCCHHHHHHH
VAFAAANAVRPGWIE
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA