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The map label for this gene is yafC [C]

Identifier: 126452574

GI number: 126452574

Start: 3123069

End: 3124049

Strand: Direct

Name: yafC [C]

Synonym: BURPS1106A_3206

Alternate gene names: 126452574

Gene position: 3123069-3124049 (Clockwise)

Preceding gene: 126455332

Following gene: 126453293

Centisome position: 78.3

GC content: 67.28

Gene sequence:

>981_bases
ATGAACCAAATCCAGACCATGCGTGTCTTCGTATGTGTTGCCGAACTGCAGAGCTTCCGCCGGGCGGCGCGGAAACTCGG
CGTATCGAATGCGCTCGTCACGCGTTCGATCGCGATGCTCGAAACACATCTGAACACGCGTCTCATCCATCGTACGACAC
GCAATCTGTCGCTGACGGAAGCGGGCATCCGCTATCTCGACGGCTGCAGGGCGCTCCTCGAGGAGTTCGATCAGCTCGAG
GCGTCCGTCGAGCGGGCGGTGCACGAGCCCGTCGGCACATTGCGCGTGGCCGTGTCCGGGTTGCTGTCGCCCGGCCGGAT
CACCCCGCTCGTCGACAGCTACCGGCGCCAGTACCCGAAGGTGCGCGTGCAACTGACGCTCACCGAGGGCGCGCTCGACG
TGATCGAAGCCGGCTACGACGCGGGCCTCGTCACGGGCGGCCGCCTCGACGGCAACCCGGCGCTGATCGGCCATCCGCTG
ATGCCGAACACGCTCGCGCTCTGCGCGGCGCCTTCGTACATCGAGCGGCACGGCGCGCCGCACCGCCCCGACGATCTGGT
CCGCCACGCGTACATCGCGCTGCCGGCCGACCAGCATGCGTCGACCTGGCGCTTCGTCGATCCGGACCACTTCACGCATG
TCGTCTCGCTGCAGCCCGTCTACACGGTCAACAGCGCTTCGATGGTGCGCGCGGCGACGCTCGCCGGCACCGGCATTTCG
GTGCTGCCGGAGAGCTACATCGCCGATGCGCTCGAAAGCGGCGAGCTCGTGCGGATCCTCGGCGACTACCGGATCGACGA
TCCCGACACGCAGTTGTCGATCGTCTATCCGAACCGCCAGTTCCTGCCGGCGCGCACCCGCAGCTTCGTCGAGCACGCGC
TGTATCACCTCGGCGGGCAGAAGACCGAGACGAACGGCCACTACTTCATGCGCGAAGCCGGCACGGCGAAGCGCCCGGAC
GTCGTCACCGGGCTCCAGTGA

Upstream 100 bases:

>100_bases
TCGTTATTTAAGACAAGCCCAGTGCTGATCCGACAGCCTGCGGCTCGCCAGATCGAAGGCGAAAAACACAACATAATCAT
TTAATGGGCCAACGAAAGCT

Downstream 100 bases:

>100_bases
CGCCCGACTGAAGTAAACTGACGCGCACCTTTACCGGAGGCAAAGCGTGCGCGTGATTCTTTTCAGCAGCCGGCAGTACG
ACCACGATTCGTTCGATGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLE
ASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPL
MPNTLALCAAPSYIERHGAPHRPDDLVRHAYIALPADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPD
VVTGLQ

Sequences:

>Translated_326_residues
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLE
ASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPL
MPNTLALCAAPSYIERHGAPHRPDDLVRHAYIALPADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPD
VVTGLQ
>Mature_326_residues
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLE
ASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPL
MPNTLALCAAPSYIERHGAPHRPDDLVRHAYIALPADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPD
VVTGLQ

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=30.3754266211604, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=30.1369863013699, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=29.4701986754967, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789639, Length=267, Percent_Identity=29.5880149812734, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=27.2727272727273, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=28.3737024221453, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=28.0769230769231, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787879, Length=310, Percent_Identity=27.741935483871, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI145693105, Length=170, Percent_Identity=28.8235294117647, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=25.1700680272109, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=285, Percent_Identity=22.8070175438596, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35967; Mature: 35967

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AGIRYLDGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCE
VRVQLTLTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAP
EEEEEEEECCHHHHHHCCCCCCEEECCEECCCCCEEECCCCCCHHHHHCCCHHHHHCCCC
HRPDDLVRHAYIALPADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
CCHHHHHHHHEEEECCCCCCCCCCEECCCCCEEEEEECEEEEECCHHHHHHHHHCCCCHH
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQ
HCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
KTETNGHYFMREAGTAKRPDVVTGLQ
CCCCCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AGIRYLDGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCE
VRVQLTLTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAP
EEEEEEEECCHHHHHHCCCCCCEEECCEECCCCCEEECCCCCCHHHHHCCCHHHHHCCCC
HRPDDLVRHAYIALPADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
CCHHHHHHHHEEEECCCCCCCCCCEECCCCCEEEEEECEEEEECCHHHHHHHHHCCCCHH
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQ
HCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
KTETNGHYFMREAGTAKRPDVVTGLQ
CCCCCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]