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The map label for this gene is yrbH [C]

Identifier: 126452561

GI number: 126452561

Start: 3158033

End: 3158968

Strand: Reverse

Name: yrbH [C]

Synonym: BURPS1106A_3249

Alternate gene names: 126452561

Gene position: 3158968-3158033 (Counterclockwise)

Preceding gene: 126453688

Following gene: 126451595

Centisome position: 79.2

GC content: 66.24

Gene sequence:

>936_bases
ATGAACCATCACAACTATCTTGATTCCGCGCGGCAAGTCTTCGATATCGAGTCGCGCGCGCTCGCGAGTCTCTCGGCACG
CGTGGGCGACTCGTTCGGCGACGCGGTCGACGCGATCCTGCGCTCGAGTGGCCGCGTGGTCGTTTGCGGCATGGGCAAAT
CCGGGATCATCGGGCGCAAGATCGCGGCGACGTTCGCGAGCACCGGAACGCCGAGCTTTTTCATGCATCCGGGCGAGGCG
TACCACGGCGACCTCGGCATGGTGACGTCGGCCGACACGTTTCTCGCGATCTCGTATTCGGGCGAGACGGACGAAGTGAT
CAAGCTGATTCCGTTTCTGAAAAGCAACCGGAATTATCTTGTCGCGCTGACGGGCAACGCGCGATCGACGCTCGCGCAAG
CGGCGCACAGCCATCTCGACGCGGGCGTCGAGCAGGAAGCGTGTCCGCTTCAGCTCGCACCGACTTCGTCGACCACGGCC
GCGCTCGCGATGGGCGACGCACTCGCCGTCACGCTGATGAAGGCGCGCGGCTTTCGCCCGGAGAACTTCGCGCGCTTCCA
CCCGGGCGGCTCGCTCGGCCGCCGCCTGCTGTCGAAGGTCGACGACGAAATGACCGTCGACGGCCTGCCGTTCGTCGACG
AGCGCGCGCCGGCGATCGACGTGCTGCAGGCGATGACGCGGGGCCGGCTCGGGCTCGCGATCGTGCGGCGCGAAACGGGC
TTCGGAATCGTCACCGACGGCGATGTCCGTCGCGCGATCGAGGCGTATGGAGACACGCTGTTCCGGCGCGCCGCGTCGGA
TCTGATGTCGGCGGATCCGGCGATGGTGCCGCTCGGCACGCGCGTGGAAGACGCGTTGCTGATGATGGAGGCGCGGCGCA
TCAACGCGCTGCTCGTATTCGACGGTGAAGACGTCGTCGGCGTGTTCAAGAAATAG

Upstream 100 bases:

>100_bases
TGCCGCGCGCCGCAGCGGCCGCCGGCTTCATGCAGCGTGCGTGCGACGGTGCGCGCCGCAATATTCCCCCCCATTTTCCA
TGGCCCATGACGGCTCCCAG

Downstream 100 bases:

>100_bases
GGAGGCGGCACGCGGCCGGATATTTATTCCGGATTTCGAAACATCCACCGCGATCGAAGAGGAACGGCCGTCACGCGAAG
CGAAAGACGAATCGGCGCGC

Product: KpsF/GutQ family sugar isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNHHNYLDSARQVFDIESRALASLSARVGDSFGDAVDAILRSSGRVVVCGMGKSGIIGRKIAATFASTGTPSFFMHPGEA
YHGDLGMVTSADTFLAISYSGETDEVIKLIPFLKSNRNYLVALTGNARSTLAQAAHSHLDAGVEQEACPLQLAPTSSTTA
ALAMGDALAVTLMKARGFRPENFARFHPGGSLGRRLLSKVDDEMTVDGLPFVDERAPAIDVLQAMTRGRLGLAIVRRETG
FGIVTDGDVRRAIEAYGDTLFRRAASDLMSADPAMVPLGTRVEDALLMMEARRINALLVFDGEDVVGVFKK

Sequences:

>Translated_311_residues
MNHHNYLDSARQVFDIESRALASLSARVGDSFGDAVDAILRSSGRVVVCGMGKSGIIGRKIAATFASTGTPSFFMHPGEA
YHGDLGMVTSADTFLAISYSGETDEVIKLIPFLKSNRNYLVALTGNARSTLAQAAHSHLDAGVEQEACPLQLAPTSSTTA
ALAMGDALAVTLMKARGFRPENFARFHPGGSLGRRLLSKVDDEMTVDGLPFVDERAPAIDVLQAMTRGRLGLAIVRRETG
FGIVTDGDVRRAIEAYGDTLFRRAASDLMSADPAMVPLGTRVEDALLMMEARRINALLVFDGEDVVGVFKK
>Mature_311_residues
MNHHNYLDSARQVFDIESRALASLSARVGDSFGDAVDAILRSSGRVVVCGMGKSGIIGRKIAATFASTGTPSFFMHPGEA
YHGDLGMVTSADTFLAISYSGETDEVIKLIPFLKSNRNYLVALTGNARSTLAQAAHSHLDAGVEQEACPLQLAPTSSTTA
ALAMGDALAVTLMKARGFRPENFARFHPGGSLGRRLLSKVDDEMTVDGLPFVDERAPAIDVLQAMTRGRLGLAIVRRETG
FGIVTDGDVRRAIEAYGDTLFRRAASDLMSADPAMVPLGTRVEDALLMMEARRINALLVFDGEDVVGVFKK

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=308, Percent_Identity=48.0519480519481, Blast_Score=266, Evalue=1e-72,
Organism=Escherichia coli, GI87082151, Length=298, Percent_Identity=45.3020134228188, Blast_Score=228, Evalue=4e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 33266; Mature: 33266

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHHNYLDSARQVFDIESRALASLSARVGDSFGDAVDAILRSSGRVVVCGMGKSGIIGRK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
IAATFASTGTPSFFMHPGEAYHGDLGMVTSADTFLAISYSGETDEVIKLIPFLKSNRNYL
HHHHHHCCCCCCEEECCCCCCCCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHCCCCEE
VALTGNARSTLAQAAHSHLDAGVEQEACPLQLAPTSSTTAALAMGDALAVTLMKARGFRP
EEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHCHHHHHHHHHHCCCCC
ENFARFHPGGSLGRRLLSKVDDEMTVDGLPFVDERAPAIDVLQAMTRGRLGLAIVRRETG
CCCEEECCCHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCC
FGIVTDGDVRRAIEAYGDTLFRRAASDLMSADPAMVPLGTRVEDALLMMEARRINALLVF
CEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCEEEEE
DGEDVVGVFKK
CCCCCCCCCCC
>Mature Secondary Structure
MNHHNYLDSARQVFDIESRALASLSARVGDSFGDAVDAILRSSGRVVVCGMGKSGIIGRK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
IAATFASTGTPSFFMHPGEAYHGDLGMVTSADTFLAISYSGETDEVIKLIPFLKSNRNYL
HHHHHHCCCCCCEEECCCCCCCCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHCCCCEE
VALTGNARSTLAQAAHSHLDAGVEQEACPLQLAPTSSTTAALAMGDALAVTLMKARGFRP
EEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHCHHHHHHHHHHCCCCC
ENFARFHPGGSLGRRLLSKVDDEMTVDGLPFVDERAPAIDVLQAMTRGRLGLAIVRRETG
CCCEEECCCHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCC
FGIVTDGDVRRAIEAYGDTLFRRAASDLMSADPAMVPLGTRVEDALLMMEARRINALLVF
CEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCEEEEE
DGEDVVGVFKK
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]