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The map label for this gene is omlA [H]

Identifier: 126452542

GI number: 126452542

Start: 3363657

End: 3364448

Strand: Reverse

Name: omlA [H]

Synonym: BURPS1106A_3454

Alternate gene names: 126452542

Gene position: 3364448-3363657 (Counterclockwise)

Preceding gene: 126451609

Following gene: 126453652

Centisome position: 84.35

GC content: 73.61

Gene sequence:

>792_bases
GTGCGGAGCACCGTCATCGCAGCTGTCGCCGTGGTCGGACTGGCCGCCTGTTCGTCGTACGACAGCGTGACCCAGCGGAT
CGCGCAGAGCATTACGCCGTATCGGATCACCGTCGTCCAGGGCAACTTCGTGTCGCAGGAAAAGGCGTCGCAACTGCAGG
TCGGCATGTCGCGCGAGCAGGTGCGCGCGCTGCTCGGCACGCCGCTGCTGACCGACATGTTCCATGCGGATCGCTGGGAT
TACCTTTTCTACTTCAAGCGCGGCTCGACGTCGGTCGTCCAGCAGCGCGATCTCGTGGTGAATTTCGCGGGCGATCGCCT
CGCCGGCTGGTCGGGCGCCGAGAATCTGCCGTCCGAGCTCGATCTGCTCGCCGACATCGACGGCGATCGTCGCGGCAAGA
AGGCGCGCGCGGCCGCAGCCGCGGCCGCGCGCGCCGCCTCCGCGCCCGAAGCCGCCGCGGCGGCTCCCGAAGCCATGCAG
GCGGCGGAGCAGAACGACGCGAACGCGCAGGCGGCGCGAGCGGCGAACCGCGCGACCGCGCAGGTGCCCGGTCAGAGCGG
CGCGGCGTCCCGCTTCGCGCCTTCCGCGCAGATGGCGCCGAACGCGCCGACGCCGGGCGGCCTGCCGCCCGGCGCCGCGC
CCGCGATCCAGCCGCAGTTCCAGTTCCATCGCCCGCCTCCGCCGCCCGCGCAGGGCGGCGCGAACCAGCCGGTCGGCCCG
CAGGGCGCCGACGCGCTGCCGAACCAGCCGCTCACGGCGCCCGCGTCCGGCGCGCAGGGAACGGGCGGCTGA

Upstream 100 bases:

>100_bases
CTTTTCAGTCATCTGTGACATTCTCGCGCGGCCTTGGACAAGGGCCAGCACGGTGAGGGACATGATTCCAAGATCGCTTT
TGCAACTTCAGAGGAGCCGC

Downstream 100 bases:

>100_bases
TCCGGCAGTCCGAGCCTAACCAGGGGCGGCGCGCGCCGCCCGTCTTTCATTCGTAGCAAGCAGGTAGCGCATGTCGTCCA
TGAAGATTGCGATTGCTGGG

Product: SmpA/OmlA family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQVRALLGTPLLTDMFHADRWD
YLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSELDLLADIDGDRRGKKARAAAAAAARAASAPEAAAAAPEAMQ
AAEQNDANAQAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPPAQGGANQPVGP
QGADALPNQPLTAPASGAQGTGG

Sequences:

>Translated_263_residues
MRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQVRALLGTPLLTDMFHADRWD
YLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSELDLLADIDGDRRGKKARAAAAAAARAASAPEAAAAAPEAMQ
AAEQNDANAQAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPPAQGGANQPVGP
QGADALPNQPLTAPASGAQGTGG
>Mature_263_residues
MRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQVRALLGTPLLTDMFHADRWD
YLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSELDLLADIDGDRRGKKARAAAAAAARAASAPEAAAAAPEAMQ
AAEQNDANAQAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPPAQGGANQPVGP
QGADALPNQPLTAPASGAQGTGG

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 26972; Mature: 26972

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQ
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH
VRALLGTPLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSEL
HHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHCCEEEEECCCCCCCCCCCCCCCHHH
DLLADIDGDRRGKKARAAAAAAARAASAPEAAAAAPEAMQAAEQNDANAQAARAANRATA
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHE
QVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPPAQGGANQPVGP
ECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QGADALPNQPLTAPASGAQGTGG
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQ
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH
VRALLGTPLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSEL
HHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHCCEEEEECCCCCCCCCCCCCCCHHH
DLLADIDGDRRGKKARAAAAAAARAASAPEAAAAAPEAMQAAEQNDANAQAARAANRATA
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHE
QVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPPAQGGANQPVGP
ECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QGADALPNQPLTAPASGAQGTGG
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]