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The map label for this gene is ompA [H]

Identifier: 126452529

GI number: 126452529

Start: 2062349

End: 2063113

Strand: Reverse

Name: ompA [H]

Synonym: BURPS1106A_2065

Alternate gene names: 126452529

Gene position: 2063113-2062349 (Counterclockwise)

Preceding gene: 126452217

Following gene: 126454365

Centisome position: 51.73

GC content: 60.39

Gene sequence:

>765_bases
ATGTTCATTTTCGCGAGCAATGAGGGTTTCGTTGCGCCGTCAAAGATGGCGTTTCCGCAAGGTATTCCGATCGATCCGGA
TGCGCTAAAGAAACTGCAGTTGGGGATGAGTAAAGATCAGGTTCGCGATGCATTGGGAGACCGGCAGTACAACGGAGAGG
ATCTCCCGATCTGGCATCGCTGGGACTATCTTTTCCAGCTCCGTGCTCCTGACGGTGCGGTGCATCAGTGTCAATACCAG
GTGCGCTTCTTGGGGGGGCTCGCCTATCGCGGCTATTGGGCGGACTCGGCGTGTCGGGACATCGCCGCGCGCTATGCGGA
TGCAGCCGGGCTGGGCGTGATCGCCGTCGCGCCGTGCAACCCTTCGGACGTCGCGGCGCCGCTGCCAGAGCGGGTCGAAC
TGCCGACGGACACACTGTTCGCGTTCGACAAGGGGGGATTCGAGGATATCTCGGCCGATGGCCGCAGGCAACTTGGCGAT
CTGGTCGCGTCGATCAAGGCGAAGATTCTCTCGATCAATCACTTGATCGTGACGGGCTACACAGATCGGCTTGGCAGCGA
CGAGCACAACGCCCGATTGTCCAGCGAGCGCGCACGCACGGTCGCGGACTACATGATCGCGGAAGGGATTCCTGCTGCGA
AGATTACGGCCGTTGGAAGGGGCGCGGCCGATCCAGTGGTCGTCTGCAACAACGGCGAACAGCCTGAACTCATCCGCTGC
CTGCAAAAGAACCGGCGCGTGGAAATCCGCATCAAGCAAAAGTGA

Upstream 100 bases:

>100_bases
TACTAACGTGTTTGGCGGGATATTCGTAGGTATGCTGAGCGTTGCGCTGCTAGGTTGCGCCAGCGTGGAAAAGCCGGCGG
CCTACGGTGAGCCGAGCCCA

Downstream 100 bases:

>100_bases
CGACGGAAATTCTCGGAATGAAGAGCGAGAACGCGAGGAATACTGAAAGCGGGGTGAGCGTGAAAACGACGACTTGGAAG
CAAATTGGCGTTCGTGCTGC

Product: ompA family protein

Products: NA

Alternate protein names: Outer membrane protein II [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFIFASNEGFVAPSKMAFPQGIPIDPDALKKLQLGMSKDQVRDALGDRQYNGEDLPIWHRWDYLFQLRAPDGAVHQCQYQ
VRFLGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCNPSDVAAPLPERVELPTDTLFAFDKGGFEDISADGRRQLGD
LVASIKAKILSINHLIVTGYTDRLGSDEHNARLSSERARTVADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRC
LQKNRRVEIRIKQK

Sequences:

>Translated_254_residues
MFIFASNEGFVAPSKMAFPQGIPIDPDALKKLQLGMSKDQVRDALGDRQYNGEDLPIWHRWDYLFQLRAPDGAVHQCQYQ
VRFLGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCNPSDVAAPLPERVELPTDTLFAFDKGGFEDISADGRRQLGD
LVASIKAKILSINHLIVTGYTDRLGSDEHNARLSSERARTVADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRC
LQKNRRVEIRIKQK
>Mature_254_residues
MFIFASNEGFVAPSKMAFPQGIPIDPDALKKLQLGMSKDQVRDALGDRQYNGEDLPIWHRWDYLFQLRAPDGAVHQCQYQ
VRFLGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCNPSDVAAPLPERVELPTDTLFAFDKGGFEDISADGRRQLGD
LVASIKAKILSINHLIVTGYTDRLGSDEHNARLSSERARTVADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRC
LQKNRRVEIRIKQK

Specific function: Required for the action of colicins K and L and for the stabilization of mating aggregates in conjugation. Serves as a receptor for a number of T-even like phages. Also acts as a porin with low permeability that allows slow penetration of small solutes [H

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=126, Percent_Identity=40.4761904761905, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR002368
- InterPro:   IPR006690
- InterPro:   IPR000498
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA; PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 27900; Mature: 27900

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIFASNEGFVAPSKMAFPQGIPIDPDALKKLQLGMSKDQVRDALGDRQYNGEDLPIWHR
CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEE
WDYLFQLRAPDGAVHQCQYQVRFLGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCN
CEEEEEEECCCCCHHHHHHHEEECCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCC
PSDVAAPLPERVELPTDTLFAFDKGGFEDISADGRRQLGDLVASIKAKILSINHLIVTGY
CCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECC
TDRLGSDEHNARLSSERARTVADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRC
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCHHHHHH
LQKNRRVEIRIKQK
HHHCCEEEEEEECC
>Mature Secondary Structure
MFIFASNEGFVAPSKMAFPQGIPIDPDALKKLQLGMSKDQVRDALGDRQYNGEDLPIWHR
CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEE
WDYLFQLRAPDGAVHQCQYQVRFLGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCN
CEEEEEEECCCCCHHHHHHHEEECCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCC
PSDVAAPLPERVELPTDTLFAFDKGGFEDISADGRRQLGDLVASIKAKILSINHLIVTGY
CCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECC
TDRLGSDEHNARLSSERARTVADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRC
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCHHHHHH
LQKNRRVEIRIKQK
HHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1955870 [H]