| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is ybbP [H]
Identifier: 126452428
GI number: 126452428
Start: 1234663
End: 1237305
Strand: Direct
Name: ybbP [H]
Synonym: BURPS1106A_1259
Alternate gene names: 126452428
Gene position: 1234663-1237305 (Clockwise)
Preceding gene: 126451843
Following gene: 126454344
Centisome position: 30.96
GC content: 74.16
Gene sequence:
>2643_bases TTGACGGCGGCGGGCAAAGCGAGGCCGGCCGGCCGCCGTTTCGGCCTCGTCGATCTGCTGCGGCAGGCCGGGCGGATGAC GCTGCGCGACTGGCGCGCGGGCGAGTTGACGCTCGTCGCGCTCGCGCTCGTGCTTGCCGTCGCGGCGCTCACGAGCGTCG GCTTTCTCGCCGATAGGCTGCGCCAGGGGCTCGAGCGCGACGCACGCCGGATGCTCGGCGCGGATTTCGTCGTGCGGGCC GATCATCCGGTCGATCCGGCGTTCGCGCACGAGGCGCGAACGCTCGGCCTCGCGACCGCGACGACCGCGGTCTTTCCCAG CATGGTGGGCGCGGCCAAGCCGGCCGATTCAGCCGATTCAGCCGGTTCAGCCAAGGCCGGCACGCCCGCGCCGTCCGCCG CGGCGGACGGCGCGGGCAGCTCGCCGCCCGTGCGGCTCGCGGCCGTGAAGGCGGTGTCGGCCGGCTATCCGCTGCGCGGC GCGGTCGAGATCGCGCCCGAGGCGAACGCGCCCGGCCGCGCCGCCGGCTCGATTCCAGCCTCGGGCACGGTGTGGGTCGA TCCGTCGCTGCTCGACGCGCTCCATTTGAAGGTCGGCGACGCGCTGCGCGTCGGCGGCCGCACGTTCACGATCGGCGCGG CGATCACCCGCGAGCTCGACCGCGGCTTCTCGTTCGTCAATTTCTCGCCGCGCGTGATGCTGCGCGCGGACGAGCTCGAA TCGACGGGGCTCACGGGCTACGGCAGCCGCGTCACGTACCGGCTCCTCGTCGCGGGCGACGATGCGGCCGTCGAGCGCTT CGCGCGCTACGCGCATGCGCGCGTCGACGGCGGCAAGCTGCGCGGCGTCGCGCTCGAATCGCTGCAGGAAGGCCAGCCGC AGGTGCGGCAGACGCTCGACCGCGCGCGCCATTTCCTCACGCTCGTCGCGCTGTTGACCGCGCTGCTCGCGGCCGTCGCG ATCGCGATGGCCGCGCAGCGCTACATGCGCCGCCATCTCGACGGCTGCGCGGCGATGCGCTGCCTCGGCGCGAGCCGGCG CACGCTGTCGGCGCTGTTCGCGATCGAATTCGCGCTGCTCGGGCTCGCGGGCGGCGCGGCGGGCGCGGCGCTCGGCTACG TCGGCCATCTCGTGCTGCTGCGCGCGCTCGGCAGCCTGATCGACGTCGTGCTGCCGCCGCCTTCGGCATGGCCGGCGGCG ATCGGCGTCGGAACCGGGCTCGTGCTGCTGCTCGGCTTCGCGCTGCCGCCGCTCGCGCCGTTGACGCGCGTGCCGCCGGT GCGCGTGCTGCGCCGCGAATGGGGCGACGCCGGCCGCGTCGCGTGGGTCGGCTACGCGATGGGCATCGCGCTCTTCGCGG CGCTGTTGATCGCGGCGGCGGGCAACCTGACGCTCGGCGCGATCGTCGCGGGCGGCTTCGCGGGCAGCCTCGTGCTGTTC GCGCTCATCGCGCGGCTCGCGCTCGTCGCGCTCGCGCGGCTCGTGCGCGACGGCCGCGTCGCGGCGGGGCTCGGCTGGCG CCACGCGCTCGCGTCGCTCGAGCGGCGCGGCGCGGCGAGCGCGCTGCAGATCACCGCGCTCGCGCTCGGTCTGATGTGCC TGCTGCTCATCGCGATCACGCGCAACGATCTCGTCGCCGGCTGGCGGCAGTCGACGCCGCCCGACGCGCCGAACCAGTTC CTGATCGACATCCAGCCCGACCAGCGCGACGACGTCGTCCGCTATCTCGCGGCGAACGGCATCGCCGATCCGGCGCTGTC GCCGATGGTGCGCGGGCGGCTCGTCGCGGTGAACGGCAAGCCGGTGAATCCGGACGACTACAAGCGCGACGACGCGCGCC GCCTCGTCGACCGCGAGTTCAACCTCTCGTACACGACACGGCTGCCCGAGGACAACCGGCTCGTCGCGGGCGACTGGTTC GGCGCGTCGGGCGTGCCGCAGATCTCGATCGAGGCGGGGCTCGCGAAGACGCTGGGCGTGAAAACGGGCGACACGCTGCG TTTCGACGTGACGGGCCTCACCGTCGACGCGCCGGTGACGAGCGTGCGCAAGCTCGATTGGGGCACGTTCCGCGTGAACT TCTTCGTGCTGATGCCGCCCGCGGCGCTGCGCGATTTTCCGGCCACCTACATCACGAGCTTCCATTTGCCCGCCGCGCGC GAGCGCGTGCTCGACGGCCTGATCGCACGCTACCCGAACCTGACGGCGATCGACGTCGGCCCGATCCTCGCGCAGCTCGA GCGCGTGCTGCTGCAGGTGATCGGCGCGGTGCAGTTCCTGTTCGGCTTCACGCTCGCGGCGGGTGTGCTCGTGCTGTATA CGGCGCTCGCCGGCTCGCGCGACGAGCGCGTGCGCGAGGCCGCGCTGATGCGCGCGCTCGGCGCGTCGCGCAAGCAGGTC GTCGCCGTGCAGCGCGCGGAGTTCGTCGTCGTCGGCGTGCTCGCGGGCGCGATGGCGGCGGCGGGCGCGCTTGTGGTCGG CGCGGTGCTCGCGTCGCGCGTGTTCGATTTCCAGCTCGCGCCCGACCCGTGGCTCGTACCGGCCGGCATCGCGGCGGGCG TCGCGTGCGCGGGCGCGGCGGGGTGGCTCGGCCTGCGCGGCGTGCTGCGCCGGCCGGCGCTGCAATCGCTGCGCGATGCA TGA
Upstream 100 bases:
>100_bases CGTGGGCGTTGCCGCGCCTCTGGCGCGGCGTGTCGGGCGGCTTTCGCGGGATGGCGAACCACATGGTGTCGCGGCTGAAT TCGATCGGGAGCAAGCGCGA
Downstream 100 bases:
>100_bases AGCGCGCGCACGCGGTATCTTCGGGCGATCCGCCGGGGCGTTCTCCGATGGGTTTGCGCGATCTTGTTTTTCGATTCCAC CGATTCCACCGATTCCCGTA
Product: efflux ABC transporter, permease protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 880; Mature: 879
Protein sequence:
>880_residues MTAAGKARPAGRRFGLVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRLRQGLERDARRMLGADFVVRA DHPVDPAFAHEARTLGLATATTAVFPSMVGAAKPADSADSAGSAKAGTPAPSAAADGAGSSPPVRLAAVKAVSAGYPLRG AVEIAPEANAPGRAAGSIPASGTVWVDPSLLDALHLKVGDALRVGGRTFTIGAAITRELDRGFSFVNFSPRVMLRADELE STGLTGYGSRVTYRLLVAGDDAAVERFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVA IAMAAQRYMRRHLDGCAAMRCLGASRRTLSALFAIEFALLGLAGGAAGAALGYVGHLVLLRALGSLIDVVLPPPSAWPAA IGVGTGLVLLLGFALPPLAPLTRVPPVRVLRREWGDAGRVAWVGYAMGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLF ALIARLALVALARLVRDGRVAAGLGWRHALASLERRGAASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQF LIDIQPDQRDDVVRYLAANGIADPALSPMVRGRLVAVNGKPVNPDDYKRDDARRLVDREFNLSYTTRLPEDNRLVAGDWF GASGVPQISIEAGLAKTLGVKTGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPAAR ERVLDGLIARYPNLTAIDVGPILAQLERVLLQVIGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMRALGASRKQV VAVQRAEFVVVGVLAGAMAAAGALVVGAVLASRVFDFQLAPDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA
Sequences:
>Translated_880_residues MTAAGKARPAGRRFGLVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRLRQGLERDARRMLGADFVVRA DHPVDPAFAHEARTLGLATATTAVFPSMVGAAKPADSADSAGSAKAGTPAPSAAADGAGSSPPVRLAAVKAVSAGYPLRG AVEIAPEANAPGRAAGSIPASGTVWVDPSLLDALHLKVGDALRVGGRTFTIGAAITRELDRGFSFVNFSPRVMLRADELE STGLTGYGSRVTYRLLVAGDDAAVERFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVA IAMAAQRYMRRHLDGCAAMRCLGASRRTLSALFAIEFALLGLAGGAAGAALGYVGHLVLLRALGSLIDVVLPPPSAWPAA IGVGTGLVLLLGFALPPLAPLTRVPPVRVLRREWGDAGRVAWVGYAMGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLF ALIARLALVALARLVRDGRVAAGLGWRHALASLERRGAASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQF LIDIQPDQRDDVVRYLAANGIADPALSPMVRGRLVAVNGKPVNPDDYKRDDARRLVDREFNLSYTTRLPEDNRLVAGDWF GASGVPQISIEAGLAKTLGVKTGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPAAR ERVLDGLIARYPNLTAIDVGPILAQLERVLLQVIGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMRALGASRKQV VAVQRAEFVVVGVLAGAMAAAGALVVGAVLASRVFDFQLAPDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA >Mature_879_residues TAAGKARPAGRRFGLVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRLRQGLERDARRMLGADFVVRAD HPVDPAFAHEARTLGLATATTAVFPSMVGAAKPADSADSAGSAKAGTPAPSAAADGAGSSPPVRLAAVKAVSAGYPLRGA VEIAPEANAPGRAAGSIPASGTVWVDPSLLDALHLKVGDALRVGGRTFTIGAAITRELDRGFSFVNFSPRVMLRADELES TGLTGYGSRVTYRLLVAGDDAAVERFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAI AMAAQRYMRRHLDGCAAMRCLGASRRTLSALFAIEFALLGLAGGAAGAALGYVGHLVLLRALGSLIDVVLPPPSAWPAAI GVGTGLVLLLGFALPPLAPLTRVPPVRVLRREWGDAGRVAWVGYAMGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLFA LIARLALVALARLVRDGRVAAGLGWRHALASLERRGAASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFL IDIQPDQRDDVVRYLAANGIADPALSPMVRGRLVAVNGKPVNPDDYKRDDARRLVDREFNLSYTTRLPEDNRLVAGDWFG ASGVPQISIEAGLAKTLGVKTGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPAARE RVLDGLIARYPNLTAIDVGPILAQLERVLLQVIGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMRALGASRKQVV AVQRAEFVVVGVLAGAMAAAGALVVGAVLASRVFDFQLAPDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=853, Percent_Identity=31.4185228604924, Blast_Score=331, Evalue=1e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 92107; Mature: 91976
Theoretical pI: Translated: 10.84; Mature: 10.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAGKARPAGRRFGLVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRL CCCCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RQGLERDARRMLGADFVVRADHPVDPAFAHEARTLGLATATTAVFPSMVGAAKPADSADS HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AGSAKAGTPAPSAAADGAGSSPPVRLAAVKAVSAGYPLRGAVEIAPEANAPGRAAGSIPA CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC SGTVWVDPSLLDALHLKVGDALRVGGRTFTIGAAITRELDRGFSFVNFSPRVMLRADELE CCEEEECHHHHHHHHHHHCCHHEECCEEEEEHHHHHHHHHCCCCEEECCCEEEEEECCCC STGLTGYGSRVTYRLLVAGDDAAVERFARYAHARVDGGKLRGVALESLQEGQPQVRQTLD CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHH RARHFLTLVALLTALLAAVAIAMAAQRYMRRHLDGCAAMRCLGASRRTLSALFAIEFALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GLAGGAAGAALGYVGHLVLLRALGSLIDVVLPPPSAWPAAIGVGTGLVLLLGFALPPLAP HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC LTRVPPVRVLRREWGDAGRVAWVGYAMGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLF CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH ALIARLALVALARLVRDGRVAAGLGWRHALASLERRGAASALQITALALGLMCLLLIAIT HHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH RNDLVAGWRQSTPPDAPNQFLIDIQPDQRDDVVRYLAANGIADPALSPMVRGRLVAVNGK HCHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC PVNPDDYKRDDARRLVDREFNLSYTTRLPEDNRLVAGDWFGASGVPQISIEAGLAKTLGV CCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCCEEEHHCHHHHHCC KTGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPAAR CCCCEEEEEEEEEEECCCHHHHHHCCCCEEEEEEEEEECCHHHHHCCHHHHHHCCCCHHH ERVLDGLIARYPNLTAIDVGPILAQLERVLLQVIGAVQFLFGFTLAAGVLVLYTALAGSR HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DERVREAALMRALGASRKQVVAVQRAEFVVVGVLAGAMAAAGALVVGAVLASRVFDFQLA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC PDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAAGKARPAGRRFGLVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRL CCCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RQGLERDARRMLGADFVVRADHPVDPAFAHEARTLGLATATTAVFPSMVGAAKPADSADS HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AGSAKAGTPAPSAAADGAGSSPPVRLAAVKAVSAGYPLRGAVEIAPEANAPGRAAGSIPA CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC SGTVWVDPSLLDALHLKVGDALRVGGRTFTIGAAITRELDRGFSFVNFSPRVMLRADELE CCEEEECHHHHHHHHHHHCCHHEECCEEEEEHHHHHHHHHCCCCEEECCCEEEEEECCCC STGLTGYGSRVTYRLLVAGDDAAVERFARYAHARVDGGKLRGVALESLQEGQPQVRQTLD CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHH RARHFLTLVALLTALLAAVAIAMAAQRYMRRHLDGCAAMRCLGASRRTLSALFAIEFALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GLAGGAAGAALGYVGHLVLLRALGSLIDVVLPPPSAWPAAIGVGTGLVLLLGFALPPLAP HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC LTRVPPVRVLRREWGDAGRVAWVGYAMGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLF CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH ALIARLALVALARLVRDGRVAAGLGWRHALASLERRGAASALQITALALGLMCLLLIAIT HHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH RNDLVAGWRQSTPPDAPNQFLIDIQPDQRDDVVRYLAANGIADPALSPMVRGRLVAVNGK HCHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC PVNPDDYKRDDARRLVDREFNLSYTTRLPEDNRLVAGDWFGASGVPQISIEAGLAKTLGV CCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCCEEEHHCHHHHHCC KTGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPAAR CCCCEEEEEEEEEEECCCHHHHHHCCCCEEEEEEEEEECCHHHHHCCHHHHHHCCCCHHH ERVLDGLIARYPNLTAIDVGPILAQLERVLLQVIGAVQFLFGFTLAAGVLVLYTALAGSR HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DERVREAALMRALGASRKQVVAVQRAEFVVVGVLAGAMAAAGALVVGAVLASRVFDFQLA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC PDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]