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The map label for this gene is ompR [H]

Identifier: 126452418

GI number: 126452418

Start: 1080579

End: 1081304

Strand: Direct

Name: ompR [H]

Synonym: BURPS1106A_1099

Alternate gene names: 126452418

Gene position: 1080579-1081304 (Clockwise)

Preceding gene: 126453627

Following gene: 126453072

Centisome position: 27.09

GC content: 69.42

Gene sequence:

>726_bases
ATGACTACTCAGATCCTCATCGTCGACGACGACCAAGAACTGCGCGACCTGTTGCGCGACTACCTCGTGCGGCAAGGCAT
CGAAGTGTCGGTGCTGCACGACGCGGCCTCGCTCGAGAAGCGCCTCGAGCGCGAGCGGCCCGATCTCATCGTGCTGGACC
TGATGATGCCGGGTGTCGACGGCCTCACCGCGCTGCGCCAACTGCGCGCGGCGGGCGACGACATTCCGGTGATCATGCTG
ACCGCGCGCGCGGACGACGTCGACCGGATCGTCGGCCTCGAGCTCGGCGCGGACGACTATCTCGGCAAGCCGTTCAACCC
GCGCGAGCTGCTCGCGCGCGCGCAGGCGGTGCTGCGCCGCCGCCGCGCGAGCCCGTCGGCGGCGGCGCCTGAGCAGCGCG
AGCCGTACGCGTTCGGCCGCTTCGTGCTCGACTTCCAGGCGCGCACGCTGTCGGTCGACAGCAAGCCGGCGACGCTGTCG
AGCAGCGAGTTCGCGCTCCTGAAGATCTTCGTCAACCATGCGCTGCGCACGCTGACCCGCGAGCGCCTGCTCGAGCTGCT
GCACGGCCCCGAGTACGACGGCACCGATCGCGGGATCGACGTGCAGGTCTGGCGTCTGCGCCGGATCCTCGAAACCGATC
CGTCGACGCCGCGCTTCATCCAGACGGTGCGCGGGCGCGGCTACGTGTTCGTGCCGAACGGCGAGGCTCATGCGCAAACC
CATTGA

Upstream 100 bases:

>100_bases
TTTACCGCGCATTACACTTTGCTTGCGCAGTAATCCGCAGTAACCCTTTCGGGGATTTGTTTCGCTCAGCCCGGCCACCC
CACACGGTAAACTTCACGCC

Downstream 100 bases:

>100_bases
TTCGCTGTTCGGGCGGCTCGCGCTCCTTGTCGTCTGCGTGCTGCTGCTGTCGCACTTCGCGTGGTACTTCGCGATCCGGC
TCGAGCGCAATCAGTTCCAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGLTALRQLRAAGDDIPVIML
TARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRASPSAAAPEQREPYAFGRFVLDFQARTLSVDSKPATLS
SSEFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPNGEAHAQT
H

Sequences:

>Translated_241_residues
MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGLTALRQLRAAGDDIPVIML
TARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRASPSAAAPEQREPYAFGRFVLDFQARTLSVDSKPATLS
SSEFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPNGEAHAQT
H
>Mature_240_residues
TTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGLTALRQLRAAGDDIPVIMLT
ARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRASPSAAAPEQREPYAFGRFVLDFQARTLSVDSKPATLSS
SEFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPNGEAHAQTH

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=52.1551724137931, Blast_Score=234, Evalue=3e-63,
Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=38.7931034482759, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=37.5545851528384, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=36.0515021459227, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=40, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=34.8936170212766, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=35.4978354978355, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=34.8214285714286, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1786784, Length=233, Percent_Identity=35.6223175965665, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786911, Length=232, Percent_Identity=37.0689655172414, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=36.1233480176211, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=33.7719298245614, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787375, Length=226, Percent_Identity=29.646017699115, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790552, Length=232, Percent_Identity=33.1896551724138, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=34.2592592592593, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=35.6435643564356, Blast_Score=63, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=170, Percent_Identity=27.0588235294118, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27230; Mature: 27098

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD
CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCH
GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHH
RRASPSAAAPEQREPYAFGRFVLDFQARTLSVDSKPATLSSSEFALLKIFVNHALRTLTR
HCCCCCCCCCCCCCCHHHHHEEEEEEHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPNGEAHAQT
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCC
H
C
>Mature Secondary Structure 
TTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD
CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCH
GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHH
RRASPSAAAPEQREPYAFGRFVLDFQARTLSVDSKPATLSSSEFALLKIFVNHALRTLTR
HCCCCCCCCCCCCCCHHHHHEEEEEEHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPNGEAHAQT
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]