Click here to switch to the map view.

The map label for this gene is intD [H]

Identifier: 126452367

GI number: 126452367

Start: 3888174

End: 3888692

Strand: Reverse

Name: intD [H]

Synonym: BURPS1106A_3986

Alternate gene names: 126452367

Gene position: 3888692-3888174 (Counterclockwise)

Preceding gene: 126453740

Following gene: 126455444

Centisome position: 97.5

GC content: 60.31

Gene sequence:

>519_bases
TTGATTCTCGCGGCCGGGGCGGTCGCCCGACAGCCGCATCTTCGAAACTTCGTGCGACTCGCCTTGAGCACGGGGTGTAG
GAAAAACGAGCTGCTCGCGCTCGAGTGGCACCGGGTCGATTTCGAGCGTTCACTTTTTCGACTCGAGTGCGAGCACACGA
AGAACGGTAAGCGTCGATTGGTGCCGCTCAACAGTGGCGCGTTGTTGGCGCTGAGGGATCAGCGTGATTGGGTAGCGCGA
CATTGCGCCGGGTCTGAGTGGGTGTTTGCCTCCAGCTCGGGGAGGCGAGTCGGCAACCTGCAAAAAGGATTCGTCGCGGC
ATGTGCTCGCGCCGGAATCGAAAATTTCCGCATCCACGATCTGCGCCACACCTTCGCATCATGGCTCGTCATGGAGGGCG
TTTCCCTGTACGTCGTCAAGGACCTGTTGGGACATTCCTCCATCACGGTCGCTGAGCGCTATGCGCATCTGTCCCCTGAT
CACGGTCGCGAGGCCGTGCAGAAACTCTTGCCGCTCTAA

Upstream 100 bases:

>100_bases
CGAGCACGACTACCCGGAACTGGCAAACCCAGTGCAGAGCCTCGGTCTTGATGGTGGCGAATCGCGAGTTCGCTGGATAT
CACGAAGCGAGGCGACGGCG

Downstream 100 bases:

>100_bases
CCGATTGGTTGAATTGCAGCGGCATAGCAAATTTGCTAACACGAAACAAAATTGGACAGTCGTCTATTACAACGAGCGCG
TCAAACGCGACGTCTTCGCG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRLVPLNSGALLALRDQRDWVAR
HCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPD
HGREAVQKLLPL

Sequences:

>Translated_172_residues
MILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRLVPLNSGALLALRDQRDWVAR
HCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPD
HGREAVQKLLPL
>Mature_172_residues
MILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRLVPLNSGALLALRDQRDWVAR
HCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPD
HGREAVQKLLPL

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=163, Percent_Identity=38.6503067484663, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 19374; Mature: 19374

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRL
CEEECCCHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHEEECCCCCCCCEEE
VPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHD
EEECCCCEEEEECCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
LRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLPL
HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRL
CEEECCCHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHEEECCCCCCCCEEE
VPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHD
EEECCCCEEEEECCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
LRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLPL
HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]