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The map label for this gene is flgF [H]

Identifier: 126452329

GI number: 126452329

Start: 264392

End: 265153

Strand: Direct

Name: flgF [H]

Synonym: BURPS1106A_0282

Alternate gene names: 126452329

Gene position: 264392-265153 (Clockwise)

Preceding gene: 126453793

Following gene: 126454438

Centisome position: 6.63

GC content: 68.77

Gene sequence:

>762_bases
ATGGACCGACTGATCTATACGGCGATGACGGGCGCGACGCAGTCGCTCGAGCAGCAGTCCGTCGTCGCGAACAATCTCGC
GAACGCGTCGACGACGGGCTTTCGCGCGCAGCTCGCGACGTTCCGCGCGGTGCCGATGAACTTCGAGGACGGCAGCGGCA
ACGTCGACCCGGCGACGACGCGCACCTACACGCTGTCGTCGACGCCCGGCGCGGATTTCGCGCCGGGGCCGATCGAGCGC
ACGGGCAACCCGCTCGACGTCGCGGTTCAGGGGCCGGGCTGGCTGTCGGTGATGCTGCCGGACGGCACCGAGGCGTACAC
GCGCGCGGGCAACCTGCACGTCGACCAGAACGGGCAGCTCGTCACCGCGAACAACCTGCCCGTCGTCGGCAACGGCGGCC
CGCTCGCCGTGCCGCCGAACGCGCAGCTCACGATCGGCGCGGACGGCACCGTCTCGGCGCTGATGCCGGGCGATCCGCCG
ACCGCCGTCGCGATGATCGATCGACTGAAGCTCGTGAATCCCGATCCCGCGACGATGAAGCGCGGCGACGACGGCCTGTT
CCGCACCGCGGACGGCAATCCCGCCGACGCCGATCCGGCCGTGAAGGTCGTGCCGAATTCGCTCGAGGGCAGCAACGTCA
ATCCGGTGGCGGCGATGGTGTCGATGATCGACAACGCGCGCGCGTTCGAATTGCAGACCAAGCTGATCCAGTCCGCCGAC
CAGAACGAGCAGGCGGCGAACCAACTGCTCAACTTCAGCTAA

Upstream 100 bases:

>100_bases
AGCGCAACTACCAGGCGAACGCGCAGACGATCAAGACGCAGCAGACCGTCGACCAGACGCTCATCAACCTGTAAGCGGCC
TTCGCGGATAACAGCCAGCC

Downstream 100 bases:

>100_bases
GCGCCGCCGCGCGCCAGACCAAGGAGTCAACACGTGAACCGTTCCCTCTACATCGCCGCGACCGGCATGAACGCGCAGCA
AGCGCAGATGGACGTGATCT

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPGADFAPGPIER
TGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTANNLPVVGNGGPLAVPPNAQLTIGADGTVSALMPGDPP
TAVAMIDRLKLVNPDPATMKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSAD
QNEQAANQLLNFS

Sequences:

>Translated_253_residues
MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPGADFAPGPIER
TGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTANNLPVVGNGGPLAVPPNAQLTIGADGTVSALMPGDPP
TAVAMIDRLKLVNPDPATMKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSAD
QNEQAANQLLNFS
>Mature_253_residues
MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPGADFAPGPIER
TGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTANNLPVVGNGGPLAVPPNAQLTIGADGTVSALMPGDPP
TAVAMIDRLKLVNPDPATMKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSAD
QNEQAANQLLNFS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=259, Percent_Identity=53.2818532818533, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI1787318, Length=270, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26300; Mature: 26300

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCE
RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQL
EEEEECCCCCCCCCCCCHHHCCCCEEEEEECCCEEEEEECCCCHHHHCCCCEEECCCCCE
VTANNLPVVGNGGPLAVPPNAQLTIGADGTVSALMPGDPPTAVAMIDRLKLVNPDPATMK
EEECCCEEEECCCCEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHEECCCCHHHHC
RGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSAD
CCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
QNEQAANQLLNFS
CCHHHHHHHHCCC
>Mature Secondary Structure
MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCE
RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQL
EEEEECCCCCCCCCCCCHHHCCCCEEEEEECCCEEEEEECCCCHHHHCCCCEEECCCCCE
VTANNLPVVGNGGPLAVPPNAQLTIGADGTVSALMPGDPPTAVAMIDRLKLVNPDPATMK
EEECCCEEEECCCCEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHEECCCCHHHHC
RGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSAD
CCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
QNEQAANQLLNFS
CCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2129540; 11677609; 2193164; 2181149 [H]