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The map label for this gene is yngJ [H]

Identifier: 126452328

GI number: 126452328

Start: 1288648

End: 1289781

Strand: Direct

Name: yngJ [H]

Synonym: BURPS1106A_1317

Alternate gene names: 126452328

Gene position: 1288648-1289781 (Clockwise)

Preceding gene: 126453242

Following gene: 126454967

Centisome position: 32.31

GC content: 72.05

Gene sequence:

>1134_bases
ATGAACTTCACTTTCAGCGAAGAACAACAGCAATTCGCCCATGCGCTGCGCCGCTATCTCGACGAGCGCTACGGCTTCGA
CGCGCGGCGCGCGATCATCCATTCGGACGCGGGCGTTTGCGACGAGCAGTGGCGCGCGTTCGCCGAGCTGGGCCTGACCG
CGCTGCCCGTGCCCGAGGCGCACGGCGGCTTCGGCGGCGGCGCGGTCGACATGCTGGTCGCGACGCAGGAGCTCGGGCGC
GCGCTCGTCGTCGAGCCTTATTGGGCGACGGCGGTCGGGATCGAGGCGCTGCGCGTCGCGGGCTCGGCCGACGGCGAGGA
CGCGGCGCTCCTCGCGCGCGCGGCGCAGGGCGACGCGAAGCTCGCGGTCGCGTTCCACGAGCCGCATGCGCGCCACGATC
TGTTCGCGATCGAGACGCTCGCGCGGCCCGACGGCGACGGGTTCGCGCTGACGGGCGTGAAGTCGGTCGTTCGGCACGGC
GCGCAGGCGGACGTGCTGATCGCGCCCGCGCGGCTGCCGAACGGCGCGATCGGCCTTTTTGCGATCGCGCGCGGCGCGGC
GGGCGCCGACATCGTCGACTACCGGACGATCGACGGCCAGCGCGCGGCGACGGTCCGCTTCTCGGACACGCCCGCTCGCG
CGCTCGCGGGCGGCGAGCGCGACGCCGCCGCGCTCGAGAGGATCGCCGACTACGGCGTCGTGCTGCTGTGCGGCGAGGCG
ATCGGCGCGCTCGACGCGCTCAACCATGCGACGCTCGACTACACGAAAACGCGCGAACAGTTCGGCGTGCCGATCGCGCG
CTTCCAGGCGCTGCAGCACCGGATGGTCGACATGCTGATCCACGCCGAGCAGGCGCGCTCGCTGACCTATCTTGCCGCGG
TGCGCTACGCGAGCGACGACGCGAACGCGCGCCGCAAGGCGGTGTCGGCGGCGAAGGCCCGCGTCGGGCAGGCCGCGCGC
TTCGTCGGCCAGCAGGCGGTGCAGTTGCACGGCGGGATGGGCGTCACCGACGAGGTCGCGGCCGCGCATCTGTTCAAGCG
GTTGTCGATCATCGAAACGACGCTCGGCGACGTCGATCACCACCTCGCACGTTTCGCGTCGCTGCCGGATTTCGCGTTGC
TGCAGGATGCCTGA

Upstream 100 bases:

>100_bases
ATTACTTCAACTACCGCAAGACGTCGATCTATGGCGGTTCGAACGAAATCCAGAAGAACATCATCGCGCAGATGATTCTC
GGCCTGTGAGGAGCGGCGCC

Downstream 100 bases:

>100_bases
GCGGGCGGTGTCCGCCCGTTTCATTTCACGGAGAAGCTCGATGGGTATCAGTTACGAAGACCTGGAAGTCGGCAGTAGAA
CCGAAGTCGGCAAGCATCGA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MNFTFSEEQQQFAHALRRYLDERYGFDARRAIIHSDAGVCDEQWRAFAELGLTALPVPEAHGGFGGGAVDMLVATQELGR
ALVVEPYWATAVGIEALRVAGSADGEDAALLARAAQGDAKLAVAFHEPHARHDLFAIETLARPDGDGFALTGVKSVVRHG
AQADVLIAPARLPNGAIGLFAIARGAAGADIVDYRTIDGQRAATVRFSDTPARALAGGERDAAALERIADYGVVLLCGEA
IGALDALNHATLDYTKTREQFGVPIARFQALQHRMVDMLIHAEQARSLTYLAAVRYASDDANARRKAVSAAKARVGQAAR
FVGQQAVQLHGGMGVTDEVAAAHLFKRLSIIETTLGDVDHHLARFASLPDFALLQDA

Sequences:

>Translated_377_residues
MNFTFSEEQQQFAHALRRYLDERYGFDARRAIIHSDAGVCDEQWRAFAELGLTALPVPEAHGGFGGGAVDMLVATQELGR
ALVVEPYWATAVGIEALRVAGSADGEDAALLARAAQGDAKLAVAFHEPHARHDLFAIETLARPDGDGFALTGVKSVVRHG
AQADVLIAPARLPNGAIGLFAIARGAAGADIVDYRTIDGQRAATVRFSDTPARALAGGERDAAALERIADYGVVLLCGEA
IGALDALNHATLDYTKTREQFGVPIARFQALQHRMVDMLIHAEQARSLTYLAAVRYASDDANARRKAVSAAKARVGQAAR
FVGQQAVQLHGGMGVTDEVAAAHLFKRLSIIETTLGDVDHHLARFASLPDFALLQDA
>Mature_377_residues
MNFTFSEEQQQFAHALRRYLDERYGFDARRAIIHSDAGVCDEQWRAFAELGLTALPVPEAHGGFGGGAVDMLVATQELGR
ALVVEPYWATAVGIEALRVAGSADGEDAALLARAAQGDAKLAVAFHEPHARHDLFAIETLARPDGDGFALTGVKSVVRHG
AQADVLIAPARLPNGAIGLFAIARGAAGADIVDYRTIDGQRAATVRFSDTPARALAGGERDAAALERIADYGVVLLCGEA
IGALDALNHATLDYTKTREQFGVPIARFQALQHRMVDMLIHAEQARSLTYLAAVRYASDDANARRKAVSAAKARVGQAAR
FVGQQAVQLHGGMGVTDEVAAAHLFKRLSIIETTLGDVDHHLARFASLPDFALLQDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=367, Percent_Identity=25.0681198910082, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI4557233, Length=331, Percent_Identity=26.5861027190332, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI226958414, Length=358, Percent_Identity=26.2569832402235, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI4501857, Length=374, Percent_Identity=26.7379679144385, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI187960098, Length=385, Percent_Identity=26.7532467532467, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4557231, Length=385, Percent_Identity=26.7532467532467, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI21361497, Length=365, Percent_Identity=24.1095890410959, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538396, Length=371, Percent_Identity=24.7978436657682, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17506239, Length=339, Percent_Identity=27.4336283185841, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508101, Length=346, Percent_Identity=26.0115606936416, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71985184, Length=330, Percent_Identity=25.4545454545455, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356377, Length=330, Percent_Identity=27.5757575757576, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21355753, Length=328, Percent_Identity=25.609756097561, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24646207, Length=333, Percent_Identity=25.2252252252252, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24666513, Length=342, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24660351, Length=378, Percent_Identity=25.1322751322751, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40193; Mature: 40193

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTFSEEQQQFAHALRRYLDERYGFDARRAIIHSDAGVCDEQWRAFAELGLTALPVPEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHCCCEECCCCCC
HGGFGGGAVDMLVATQELGRALVVEPYWATAVGIEALRVAGSADGEDAALLARAAQGDAK
CCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCE
LAVAFHEPHARHDLFAIETLARPDGDGFALTGVKSVVRHGAQADVLIAPARLPNGAIGLF
EEEEECCCCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCCEEEECCCCCCCCCHHH
AIARGAAGADIVDYRTIDGQRAATVRFSDTPARALAGGERDAAALERIADYGVVLLCGEA
HHHCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHCCEEEEECHH
IGALDALNHATLDYTKTREQFGVPIARFQALQHRMVDMLIHAEQARSLTYLAAVRYASDD
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ANARRKAVSAAKARVGQAARFVGQQAVQLHGGMGVTDEVAAAHLFKRLSIIETTLGDVDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HLARFASLPDFALLQDA
HHHHHHCCCCHHHHCCC
>Mature Secondary Structure
MNFTFSEEQQQFAHALRRYLDERYGFDARRAIIHSDAGVCDEQWRAFAELGLTALPVPEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHCCCEECCCCCC
HGGFGGGAVDMLVATQELGRALVVEPYWATAVGIEALRVAGSADGEDAALLARAAQGDAK
CCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCE
LAVAFHEPHARHDLFAIETLARPDGDGFALTGVKSVVRHGAQADVLIAPARLPNGAIGLF
EEEEECCCCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCCEEEECCCCCCCCCHHH
AIARGAAGADIVDYRTIDGQRAATVRFSDTPARALAGGERDAAALERIADYGVVLLCGEA
HHHCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHCCEEEEECHH
IGALDALNHATLDYTKTREQFGVPIARFQALQHRMVDMLIHAEQARSLTYLAAVRYASDD
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ANARRKAVSAAKARVGQAARFVGQQAVQLHGGMGVTDEVAAAHLFKRLSIIETTLGDVDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HLARFASLPDFALLQDA
HHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]