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The map label for this gene is ompW [H]

Identifier: 126452321

GI number: 126452321

Start: 3083171

End: 3084043

Strand: Reverse

Name: ompW [H]

Synonym: BURPS1106A_3168

Alternate gene names: 126452321

Gene position: 3084043-3083171 (Counterclockwise)

Preceding gene: 126452355

Following gene: 126453243

Centisome position: 77.32

GC content: 64.49

Gene sequence:

>873_bases
ATGCGCGGCCCGCGCGCGCATCGCGCGATCGAAGTATCAGGAGACCTCATGAAGAAGCTGATTGCCGCGTGCGTCGTTGC
CGGTGCATCGACGGGCGCTTTCGCGCAGCAGGCGGGCGACTTGGTCGCGACGCTCGGCTGGCTCCACGTGATGCCGCAGG
ATTCGACCAATGGCCTTACCACCAACGTCGTGAACTCGCCGATCAACGGGCCGCTGCGGCTGCCCGGCTCGTTCACGTCG
CCGGGCACGAGCCTCACGGTCAACAATGCGGACACGGTGGGCCTCACGTTCACGTACTTCTTCACCGATCACATCGCGGT
GACGTCCGTGCTCGGGATTCCGCCGGAGTTCGCGTTGACGGGGTACGGCGTGATCAGGCCGCCCGGTCCGTCGGGCTCGC
TCGGCAACGTCGATCTCGACAAGCCTGCGAATCAGCCCGCCGTGAAGAACGCGCGGCAATGGAGTCCGACGATCATCCTG
AACTACTACTTCAACGCGCCGAGCGCCAAGTTCCGGCCGTTCGTCGGCATCGGCATCGCATACAGCTGGTTCTCGAACAT
CGAGCTCAACGGCAATTTCGCGAAGGACATCAACGACAACCTCGGCAGCGTGCTCGCCGCGGGCGCCGGCAAGCCGGGGC
CGACGTCGGTCGAGGGCAAGGCGTCGTCGTCGTTCACGCCGGTCTACAACATCGGCGCGAGCTACGCGATCGCGAAACAC
TGGGCACTGACGGCGACGCTGTCGTACATGCCGCTCAAGACGTATTCGTCGCTCGTCATCAAGGCCGCGGACGGCACGAC
GCTCGCGACGACGCGCACGAGGCTGAAGGCCGATCCGCTCATCACGTTCGTCGGGATTTCATACAAGTTCTGA

Upstream 100 bases:

>100_bases
GCGTATTCGGCTTGCTCGACATGAGCGACGTCAACAACCCGTACTTCACGGTGGGCGCGTTCGTGCAATGAGCGGCGCGC
AGAACAGGAGACACACGGCG

Downstream 100 bases:

>100_bases
GCCGTGGGCGCGCGGCGCCGGCGCCCGGGCTTCCTGTGACCGAGCGGGCGGAATTCTCCGGCCGCAACGTCACGCCACTG
GCGGCAAGCCGCCATTCGTC

Product: OmpW family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRGPRAHRAIEVSGDLMKKLIAACVVAGASTGAFAQQAGDLVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPGSFTS
PGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALTGYGVIRPPGPSGSLGNVDLDKPANQPAVKNARQWSPTIIL
NYYFNAPSAKFRPFVGIGIAYSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNIGASYAIAKH
WALTATLSYMPLKTYSSLVIKAADGTTLATTRTRLKADPLITFVGISYKF

Sequences:

>Translated_290_residues
MRGPRAHRAIEVSGDLMKKLIAACVVAGASTGAFAQQAGDLVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPGSFTS
PGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALTGYGVIRPPGPSGSLGNVDLDKPANQPAVKNARQWSPTIIL
NYYFNAPSAKFRPFVGIGIAYSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNIGASYAIAKH
WALTATLSYMPLKTYSSLVIKAADGTTLATTRTRLKADPLITFVGISYKF
>Mature_290_residues
MRGPRAHRAIEVSGDLMKKLIAACVVAGASTGAFAQQAGDLVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPGSFTS
PGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALTGYGVIRPPGPSGSLGNVDLDKPANQPAVKNARQWSPTIIL
NYYFNAPSAKFRPFVGIGIAYSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNIGASYAIAKH
WALTATLSYMPLKTYSSLVIKAADGTTLATTRTRLKADPLITFVGISYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 30503; Mature: 30503

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGPRAHRAIEVSGDLMKKLIAACVVAGASTGAFAQQAGDLVATLGWLHVMPQDSTNGLT
CCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCEE
TNVVNSPINGPLRLPGSFTSPGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALT
EEEECCCCCCCEECCCCCCCCCCEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCCCCEEE
GYGVIRPPGPSGSLGNVDLDKPANQPAVKNARQWSPTIILNYYFNAPSAKFRPFVGIGIA
CCEEEECCCCCCCCCCEECCCCCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
YSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNIGASYAIAKH
EEEECCEEECCCCHHHHHCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHH
WALTATLSYMPLKTYSSLVIKAADGTTLATTRTRLKADPLITFVGISYKF
EEEEEEEEECCHHCCCEEEEEECCCCEEEEEHHHHCCCCEEEEEEEEECC
>Mature Secondary Structure
MRGPRAHRAIEVSGDLMKKLIAACVVAGASTGAFAQQAGDLVATLGWLHVMPQDSTNGLT
CCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCEE
TNVVNSPINGPLRLPGSFTSPGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALT
EEEECCCCCCCEECCCCCCCCCCEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCCCCEEE
GYGVIRPPGPSGSLGNVDLDKPANQPAVKNARQWSPTIILNYYFNAPSAKFRPFVGIGIA
CCEEEECCCCCCCCCCEECCCCCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
YSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNIGASYAIAKH
EEEECCEEECCCCHHHHHCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHH
WALTATLSYMPLKTYSSLVIKAADGTTLATTRTRLKADPLITFVGISYKF
EEEEEEEEECCHHCCCEEEEEECCCCEEEEEHHHHCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]