Click here to switch to the map view.

The map label for this gene is rfaC [H]

Identifier: 126452253

GI number: 126452253

Start: 3037968

End: 3039035

Strand: Reverse

Name: rfaC [H]

Synonym: BURPS1106A_3118

Alternate gene names: 126452253

Gene position: 3039035-3037968 (Counterclockwise)

Preceding gene: 126454166

Following gene: 126452533

Centisome position: 76.2

GC content: 71.35

Gene sequence:

>1068_bases
GTGTCGGCCGCCCGGCGCGATAAAATCCGTCCTTTCGGTCTGTGCCGGCCGCCGCCGGCCCTTTTTTTCAGCGTGCAAAA
AATTCTGATCGTGCGCGTGTCGTCGCTCGGCGATGTCGTGCATAACATGCCGGTGATCGCCGATATCCGCCGGCGTCACC
CCGATGCGCAGATCGACTGGCTCGTCGAGGAAGGCTTCGCCGATCTCGTGCGGCTCGTCGACGGTGTGCGCGACGTGCTG
CCGTTCTCGCTGCGGCGCTGGCGCAAGCGCTTGAGCGCATCGCAAACGTGGCGCGAGATCCGCGCGTTCCGGCGGCGCCT
CGCCGAGGAGCGCTACGACCTCGTGATCGACTGCCAGGGGCTCATCAAGACCGCGTGGGTCGCGAGCTGGGCGCGCGGGC
CGCTTGTCGGCCTCGGCAACCGCACCGACGGCGCCGGCTACGAGTGGCCGGTGCGCTTCTTCTACGACAGGCGGGTGCCG
ATCGCGCCGCGCACGCACGTCGTCGAGCGCTCGCGGCAGCTCGTCGCGGCGGCGCTGGGAGACCCCGCGCCGGCGCCCGG
CGAGCCGATCGATTTCGGCCTCGACACGCATGGCGCGGCGCGCGCGCTCGCGGCGCTCGATTTGAATCTGCCGGTGCCCT
ACGTGGTATTCGTGCACGCGACCTCGCGCGCCGACAAGCAGTGGCCCGACGAAGCGTGGACCGGCCTCGGCGAGGCGCTC
GTGCGGCGCGGCGCGTCGCTCGTGCTGCCGTGGGGCAGCGACGCCGAGCGCGCGACGAGCGAGCGCCTCGCGAAGGCGTT
CGGCGCGGCGGCGATCGTGCCGCCGAAGCTGTCGCTGCCCGCGGTCGTCGGCCTCGTCGACGGCGCGGCGGCGACGGTCG
GCGTCGATACCGGCCTCGTCCACATCGCGGCGGCGCTCAAGCGTCCGACCGTCGAACTGTACAATTTCGCGACAGCCTGG
CGCACGGGCGGCTACTGGTCGCCCAACGTCGTCAATCTCGGCACCGCCGGCGCGCCGCCGTCCCTTTCGCAGGCGAAGGA
CGCACTCGCGTCGTTCGGCCTCTTGTAA

Upstream 100 bases:

>100_bases
GCGGCGCGGCGCGCGCCGGGCGCGGCGTGCCCGAGCTTGCGCTGACGCAAGCCTTGTCCAAAAAGCGGCGACGCATGCGT
GCGTTCGCCGCTTTTTGTCT

Downstream 100 bases:

>100_bases
TCCCGACAGGCGATCATGAGCGAATCCCAGATCATCGAAATTGCGTCCGCCGACTGGAGCGGACAACAGCTGTCCGTGCC
GCGCGAGCAACTGCTCGCGG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSAARRDKIRPFGLCRPPPALFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEEGFADLVRLVDGVRDVL
PFSLRRWRKRLSASQTWREIRAFRRRLAEERYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDRRVP
IAPRTHVVERSRQLVAAALGDPAPAPGEPIDFGLDTHGAARALAALDLNLPVPYVVFVHATSRADKQWPDEAWTGLGEAL
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLVDGAAATVGVDTGLVHIAAALKRPTVELYNFATAW
RTGGYWSPNVVNLGTAGAPPSLSQAKDALASFGLL

Sequences:

>Translated_355_residues
MSAARRDKIRPFGLCRPPPALFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEEGFADLVRLVDGVRDVL
PFSLRRWRKRLSASQTWREIRAFRRRLAEERYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDRRVP
IAPRTHVVERSRQLVAAALGDPAPAPGEPIDFGLDTHGAARALAALDLNLPVPYVVFVHATSRADKQWPDEAWTGLGEAL
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLVDGAAATVGVDTGLVHIAAALKRPTVELYNFATAW
RTGGYWSPNVVNLGTAGAPPSLSQAKDALASFGLL
>Mature_354_residues
SAARRDKIRPFGLCRPPPALFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEEGFADLVRLVDGVRDVLP
FSLRRWRKRLSASQTWREIRAFRRRLAEERYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDRRVPI
APRTHVVERSRQLVAAALGDPAPAPGEPIDFGLDTHGAARALAALDLNLPVPYVVFVHATSRADKQWPDEAWTGLGEALV
RRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLVDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWR
TGGYWSPNVVNLGTAGAPPSLSQAKDALASFGLL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=330, Percent_Identity=37.2727272727273, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1790062, Length=312, Percent_Identity=25.3205128205128, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38719; Mature: 38588

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAARRDKIRPFGLCRPPPALFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
LVEEGFADLVRLVDGVRDVLPFSLRRWRKRLSASQTWREIRAFRRRLAEERYDLVIDCQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHH
LIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDRRVPIAPRTHVVERSRQLVAAALG
HHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
DPAPAPGEPIDFGLDTHGAARALAALDLNLPVPYVVFVHATSRADKQWPDEAWTGLGEAL
CCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLVDGAAATVGVDTGLV
HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHCCCHHEEECHHHHH
HIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGAPPSLSQAKDALASFGLL
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAARRDKIRPFGLCRPPPALFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
LVEEGFADLVRLVDGVRDVLPFSLRRWRKRLSASQTWREIRAFRRRLAEERYDLVIDCQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHH
LIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDRRVPIAPRTHVVERSRQLVAAALG
HHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
DPAPAPGEPIDFGLDTHGAARALAALDLNLPVPYVVFVHATSRADKQWPDEAWTGLGEAL
CCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLVDGAAATVGVDTGLV
HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHCCCHHEEECHHHHH
HIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGAPPSLSQAKDALASFGLL
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]