| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
Click here to switch to the map view.
The map label for this gene is hyi [H]
Identifier: 126452139
GI number: 126452139
Start: 2281778
End: 2282566
Strand: Direct
Name: hyi [H]
Synonym: BURPS1106A_2300
Alternate gene names: 126452139
Gene position: 2281778-2282566 (Clockwise)
Preceding gene: 126452983
Following gene: 126455103
Centisome position: 57.21
GC content: 68.31
Gene sequence:
>789_bases ATGCCGAAATTCGCCGCCAACCTGACGATGCTGTTCAACGAAGTCCCGTTTCTCGACCGTTTCGCCGCAGCGGCCGAAGC GGGCTTCAGCGCCGTCGAGTTCCTGTTTCCCTATCCGTACGCGAAGGACGAGCTCGCCGAGCGGCTCGACGCGAATCGCC TGCGCCTCGTGCTGCACAACCTGCCCGCGGGCCACTGGGATCAGGGCGAGCGCGGAATCGCGTGCCTGCCCGATCGCATC GGCGAATTCCAGGACGGCGTCGGCCGCGCGATCGACTATGCGCGCGCGCTGAAGGTGCCGCAGTTGAATTGCCTCGTCGG CATCGCGCCCGCGAGCGTCGGGCGCGACACGGCGCTCGCGACGATCGTCGAGAACCTGCGCTTCGCCGCCGCCGAGCTGA AGAAGGCAGGCCTGCGCCTGCTCGTCGAGCCATGCAACGCGTACGACATCCCCGGCTTCGCGCTGAACCGCTCCGCCGAG GCGCTCGACGTGATCCGCGCGGTCGGCGCCGACAACCTCTTCCTGCAGTACGACATCTATCACATGCAGCGCATGGAGGG CGAGCTCGCGGCGACGATCCGCCGGCACATCGGCGCGATCGCGCATGTCCAGATCGCGGACAACCCGGGCCGGCACGAAC CGGGCACGGGCGAGATCCATTACGCGTTCCTGTTCGATCTGCTCGACGAGCTCGGCTACGACGGCTATGTCGGCTGCGAA TACAAGCCGCGCACGACGACGGCCGAGGGCCTCGGCTGGCTGCGGCGGATCGCGCGCGTCGCCGCGTGA
Upstream 100 bases:
>100_bases CGCACCGCCTGCCCGATCGATCAGTTCGACTGATCGATTCGGCCGGCTCGCTCACCTGGCTTCATCCGACCTCAACTGAC CGACCAGCGAGACCTCATCC
Downstream 100 bases:
>100_bases TCCGCGCACGCATCGACGCCCGAGCTCATCCGCACATCACTCATTCATTCCGAATTCGCGATCCACAGGATTCGCCAGAC TCACAGGAGACACTGCAATG
Product: hydroxypyruvate isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MPKFAANLTMLFNEVPFLDRFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHNLPAGHWDQGERGIACLPDRI GEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALATIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAE ALDVIRAVGADNLFLQYDIYHMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE YKPRTTTAEGLGWLRRIARVAA
Sequences:
>Translated_262_residues MPKFAANLTMLFNEVPFLDRFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHNLPAGHWDQGERGIACLPDRI GEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALATIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAE ALDVIRAVGADNLFLQYDIYHMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE YKPRTTTAEGLGWLRRIARVAA >Mature_261_residues PKFAANLTMLFNEVPFLDRFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHNLPAGHWDQGERGIACLPDRIG EFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALATIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAEA LDVIRAVGADNLFLQYDIYHMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCEY KPRTTTAEGLGWLRRIARVAA
Specific function: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) [H]
COG id: COG3622
COG function: function code G; Hydroxypyruvate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hyi family [H]
Homologues:
Organism=Homo sapiens, GI300068962, Length=260, Percent_Identity=41.1538461538462, Blast_Score=185, Evalue=5e-47, Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=39.0946502057613, Blast_Score=156, Evalue=2e-38, Organism=Escherichia coli, GI1786718, Length=254, Percent_Identity=56.2992125984252, Blast_Score=290, Evalue=6e-80, Organism=Escherichia coli, GI1789095, Length=254, Percent_Identity=45.2755905511811, Blast_Score=233, Evalue=7e-63, Organism=Caenorhabditis elegans, GI17552022, Length=254, Percent_Identity=38.5826771653543, Blast_Score=179, Evalue=2e-45, Organism=Drosophila melanogaster, GI17530883, Length=262, Percent_Identity=35.1145038167939, Blast_Score=164, Evalue=5e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017643 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.22 [H]
Molecular weight: Translated: 28868; Mature: 28737
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFAANLTMLFNEVPFLDRFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHN CCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHH LPAGHWDQGERGIACLPDRIGEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALA CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH TIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAEALDVIRAVGADNLFLQYDIY HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHHH HMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCC YKPRTTTAEGLGWLRRIARVAA CCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PKFAANLTMLFNEVPFLDRFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHN CCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHH LPAGHWDQGERGIACLPDRIGEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALA CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH TIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAEALDVIRAVGADNLFLQYDIY HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHHH HMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCC YKPRTTTAEGLGWLRRIARVAA CCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8440684; 10561547; 9278503 [H]