Click here to switch to the map view.

The map label for this gene is osmY [C]

Identifier: 126451855

GI number: 126451855

Start: 3101430

End: 3101798

Strand: Reverse

Name: osmY [C]

Synonym: BURPS1106A_3185

Alternate gene names: 126451855

Gene position: 3101798-3101430 (Counterclockwise)

Preceding gene: 126452717

Following gene: 126454485

Centisome position: 77.77

GC content: 68.83

Gene sequence:

>369_bases
ATGAAATCGATCGTATCGAAGGCTGTCGCAGGCATGATCGTCGCGGCGCTCGCGTGCGGCAACGCATTCGCGCAGGCGAG
CGGCGCCGCGGCCGAGGCGAGCGCGCCCGCCGCCGCGCAGAACGCGTCGAAGGCCGCCGCGAAGACCGCGCGCAAGTCGA
ACCGCAAGCTCGGCTACGCGGTGCGCAAGGCGATCTCGAAGGTAAACGGCGTGAACGTGTCGAACATCACGGTGCGCACG
AAGGGCGGAGTCGTGACGCTCGAGGGCTCGGTGCCGGACGCGTCGCAGATCGACAAGGCGGTCGAGGCGGCGAAGGGCGT
CGCGGGCGTGGTGTCGGTCAACAACAAGCTGTCCGTGCAGCCGCAGTGA

Upstream 100 bases:

>100_bases
CCGTGCGGCGCGGCGCGACGACGCGTCGCGGTCCGCGTCACGACCGAGCATCGCCCGCTGTCGCGGTTTCCCGTCGAAAC
AACCAGAATCAGGAGAACGC

Downstream 100 bases:

>100_bases
CGGCGATGCGCGGGCGGCGCAGCGACGCCGCCCGCCGCGCGCGCCGGCCGTGCCTGGGCGCGGCGCGCGCCGCCCGGCGA
GCGGGCGATTCGAACCCATC

Product: transport-associated domain-containing protein

Products: NA

Alternate protein names: Transport-Associated Domain-Containing Protein

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKSIVSKAVAGMIVAALACGNAFAQASGAAAEASAPAAAQNASKAAAKTARKSNRKLGYAVRKAISKVNGVNVSNITVRT
KGGVVTLEGSVPDASQIDKAVEAAKGVAGVVSVNNKLSVQPQ

Sequences:

>Translated_122_residues
MKSIVSKAVAGMIVAALACGNAFAQASGAAAEASAPAAAQNASKAAAKTARKSNRKLGYAVRKAISKVNGVNVSNITVRT
KGGVVTLEGSVPDASQIDKAVEAAKGVAGVVSVNNKLSVQPQ
>Mature_122_residues
MKSIVSKAVAGMIVAALACGNAFAQASGAAAEASAPAAAQNASKAAAKTARKSNRKLGYAVRKAISKVNGVNVSNITVRT
KGGVVTLEGSVPDASQIDKAVEAAKGVAGVVSVNNKLSVQPQ

Specific function: Unknown

COG id: COG2823

COG function: function code R; Predicted periplasmic or secreted lipoprotein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 780 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 160 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 80 Molecules/Cell In: Stati

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12033; Mature: 12033

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIVSKAVAGMIVAALACGNAFAQASGAAAEASAPAAAQNASKAAAKTARKSNRKLGYA
CHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
VRKAISKVNGVNVSNITVRTKGGVVTLEGSVPDASQIDKAVEAAKGVAGVVSVNNKLSVQ
HHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCEEECC
PQ
CC
>Mature Secondary Structure
MKSIVSKAVAGMIVAALACGNAFAQASGAAAEASAPAAAQNASKAAAKTARKSNRKLGYA
CHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
VRKAISKVNGVNVSNITVRTKGGVVTLEGSVPDASQIDKAVEAAKGVAGVVSVNNKLSVQ
HHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCEEECC
PQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA