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The map label for this gene is clpV1 [H]

Identifier: 126451777

GI number: 126451777

Start: 3554956

End: 3557625

Strand: Reverse

Name: clpV1 [H]

Synonym: BURPS1106A_3654

Alternate gene names: 126451777

Gene position: 3557625-3554956 (Counterclockwise)

Preceding gene: 126454687

Following gene: 126452090

Centisome position: 89.2

GC content: 68.76

Gene sequence:

>2670_bases
ATGAGCACGCCCCTGAAGACCCTGATCGCGAAACTGAACCCGGTGTGCCGCAAGGCCACCGAGCGCGCCGCCAGCCACTG
CTTCGCGCGCGGTCACTACGAAGTGGATCTCGAGCATCTGTTTCTCGCGCTGCTCGACGAGTCGACCGGCGACGTGCCGC
TCGTGCTGCGCGCGAGCGGCGTCGATCCGCACGCGCTGCGCGCGGATCTCGAGCGCGAGCTCGAAAGACTGAAAACGGGC
AACACGCGCACGCCGGTGTTTTCGGTGCATCTGAGCGAGCTGTTCGAGCAGGCGTGGCTCATCGCGTCGCTCGATTCGCA
GATCGGACGGATCCGCTCGGGGCACCTGCTGCTCGCGCTGCTGACCGGGCCGGACCTCGCGCAGTTCGCGCAGCGGATGT
CGTCGCAGTTCGCGCGCGTGCGCGTCGATGACCTGAAGCACAAGTTCGACGAGATCGCCGCGGGTTCGAGCGAGGCCGAG
CCGCGGCACGCGGACGCCGACGTCGCGGTGCCCGACGGCGCCGCCGCTTCGGGCGATGCGCCGCGCGGCCCGTCGAAGAC
GCCGGCGCTCGACACGTACACGACGAACCTCACGCAGCGCGCGCGCGAGGGCAAGATCGACCCGGTGATCGGCCGCGATG
CGGAGATCCGCCAGGCGATCGACATCCTGATGCGCCGCCGGCAGAACAATCCGATCATGACGGGCGAGGCGGGCGTGGGC
AAGACGGCCGTCGTCGAAGGGCTCGCGCTGCGCATCGCGGCCGACGACGTGCCGCCGCCGCTTCGCGGCGTCGCGCTGCA
CGTGCTGGACATGGGCCTCCTGCAGGCGGGCGCGAGCGTGAAGGGCGAGTTCGAGAATCGCCTGAAGAGCGTGATCGACG
AGGTGAAAAAGAGCGCGCATCCGATCATTCTCTTCATCGACGAGGCGCACACGATCATCGGCGCGGGCGGGCAGGCGGGC
CAGAACGATGCGGCGAACCTGCTGAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACGATCGCGGCGACGACGTGGAGCGA
GTACAAGAAGTATTTCGAAAAGGACGCGGCGCTCGCGCGGCGCTTCCAGGTGGTGAAGATCGAGGAGCCGAGCGAGCCGC
TCGCCGCCGCGATGCTGCGCGGGATGGCGGCGCTGATGGAGCGGCACTTCAACGTGCGCGTTCTCGACGACGCGATCACC
GAGGCGGTGCGGCTGTCGCATCGCTATATCAGCGGCCGCCAGTTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCCTG
CGCGAAGGTCGCGCTCGCGCACAGCTCGACGCCCGCGGCGATCGACGACGCGAAAAAACGCATCGAGCGGATCGACGCGG
AAATCGCGGCACTCGAGCGCGAGGCCGCGAGCGGCGCCGCGCACGATGCGCGCCTCGCCGAACTGCGCGAGGCCCGCGAC
GCCGATCTGAAGGCGCTGGCCGAGGACGCCGCGCGCTACGAGGAGGAGCGCGCGCTCGTGACCGAAATCGGCGCGCTGCG
CGCCGAGCTCGATGCCGCGCGCGAGTCGTCCGCCGACGGCAAGCCCGTCGATGTCGACGCGACGCGCGCGAAGCTTGCCG
AGCGCGTCGATGCGTTGCGCGCGCGGCAGGGCAACCAGCCGATGGTGCCGTTGCAGGTCGACGGCCACGTCGTCGCGGAG
ATCGTCGCGTCGTGGACGGGCATTCCGCTCGGCAGGATGGTGAAGGACGAGATCGAGACCGTGCTGAACCTGCGCGATCT
GCTCGGCGCGCGCGTGATCGGCCAGGACCATGCGCTCGGCGCGATCGCGCAGCGCGTGCGCACCGCGACCGCGAACCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACCGCGCTCGCGCTC
GCCGACGTGCTGTACGGCGGCGAGCGCAAGCTGATCACGATCAACATGAGCGAGTATCAGGAGGCGCACAGCGTGTCGGG
CCTGAAGGGCTCGCCGCCCGGCTATGTCGGCTACGGCGAGGGCGGCGTGCTGACGGAGGCGGTGCGTCGCAATCCGTATT
CGGTCGTGTTGCTCGACGAAGTCGAGAAGGCGCATCCGGACGTGCTCGAGATGTTCTTCCAGGTGTTCGACAAGGGCGCG
ATGGACGATGCCGAAGGCCGTGAGATCGACTTCCGCAACACGCTGATCATCCTGACCTCGAACGTCGGCTCGTCGGCGGT
GATGCAGGCGTGCCTGAACAAGGCGCCGCAGGAGCTGCCCGATGCCGAGACGCTTGCCGAGACGCTGCGCCCGCAGCTCT
ACAAGACCTTCAAGCCCGCGTTCCTCGGCCGGATGAAGGTGATTCCGTACTATCCGATCTCCGACGACGTGCTCGCCGAG
ATCATCGAGCTGAAGCTCGAACGGATTCGCCGCCGGATCGAAGCGAACCACAAGGCGGCGTTCGAGTGGGACGAGTCGCT
CGTCGATGCCGTGCTCGCGCGCTGCACCGAAGTCGATTCGGGCGCGCGCAACGTCGATCACATCCTGAACGGCACGCTGC
TGCCGGAGATCGCCGAGCTCGTGCTGTCGCGCATCGCCGATGGCGAGGCGATCGTGCGGATCGCCGCGCGCGCGGCCGAG
ACGGGCGAATTCGAGTACACGGTCGAGTAA

Upstream 100 bases:

>100_bases
TCTCTGCACGCGCGAAGCCGGGCGCGACCGTGCGGACGCGCGCTACGAGCTGCATGTCATTCATTGATAACAACGATCGA
ACCTGAGTGGACCGTCACCG

Downstream 100 bases:

>100_bases
GGCCGGCGCGCGGCGCACGTCACGAGCCGCGCGCATCATCAAGCAACGACGGACGCCGCGACAACGCACTGACAAAATAG
TATTCGACCATGCCGACCAA

Product: ClpA/B type protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 889; Mature: 888

Protein sequence:

>889_residues
MSTPLKTLIAKLNPVCRKATERAASHCFARGHYEVDLEHLFLALLDESTGDVPLVLRASGVDPHALRADLERELERLKTG
NTRTPVFSVHLSELFEQAWLIASLDSQIGRIRSGHLLLALLTGPDLAQFAQRMSSQFARVRVDDLKHKFDEIAAGSSEAE
PRHADADVAVPDGAAASGDAPRGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRVLDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSSTPAAIDDAKKRIERIDAEIAALEREAASGAAHDARLAELREARD
ADLKALAEDAARYEEERALVTEIGALRAELDAARESSADGKPVDVDATRAKLAERVDALRARQGNQPMVPLQVDGHVVAE
IVASWTGIPLGRMVKDEIETVLNLRDLLGARVIGQDHALGAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADVLYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNKAPQELPDAETLAETLRPQLYKTFKPAFLGRMKVIPYYPISDDVLAE
IIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAELVLSRIADGEAIVRIAARAAE
TGEFEYTVE

Sequences:

>Translated_889_residues
MSTPLKTLIAKLNPVCRKATERAASHCFARGHYEVDLEHLFLALLDESTGDVPLVLRASGVDPHALRADLERELERLKTG
NTRTPVFSVHLSELFEQAWLIASLDSQIGRIRSGHLLLALLTGPDLAQFAQRMSSQFARVRVDDLKHKFDEIAAGSSEAE
PRHADADVAVPDGAAASGDAPRGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRVLDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSSTPAAIDDAKKRIERIDAEIAALEREAASGAAHDARLAELREARD
ADLKALAEDAARYEEERALVTEIGALRAELDAARESSADGKPVDVDATRAKLAERVDALRARQGNQPMVPLQVDGHVVAE
IVASWTGIPLGRMVKDEIETVLNLRDLLGARVIGQDHALGAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADVLYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNKAPQELPDAETLAETLRPQLYKTFKPAFLGRMKVIPYYPISDDVLAE
IIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAELVLSRIADGEAIVRIAARAAE
TGEFEYTVE
>Mature_888_residues
STPLKTLIAKLNPVCRKATERAASHCFARGHYEVDLEHLFLALLDESTGDVPLVLRASGVDPHALRADLERELERLKTGN
TRTPVFSVHLSELFEQAWLIASLDSQIGRIRSGHLLLALLTGPDLAQFAQRMSSQFARVRVDDLKHKFDEIAAGSSEAEP
RHADADVAVPDGAAASGDAPRGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVGK
TAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAGQ
NDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRVLDDAITE
AVRLSHRYISGRQLPDKAISVLDTACAKVALAHSSTPAAIDDAKKRIERIDAEIAALEREAASGAAHDARLAELREARDA
DLKALAEDAARYEEERALVTEIGALRAELDAARESSADGKPVDVDATRAKLAERVDALRARQGNQPMVPLQVDGHVVAEI
VASWTGIPLGRMVKDEIETVLNLRDLLGARVIGQDHALGAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALA
DVLYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAM
DDAEGREIDFRNTLIILTSNVGSSAVMQACLNKAPQELPDAETLAETLRPQLYKTFKPAFLGRMKVIPYYPISDDVLAEI
IELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAELVLSRIADGEAIVRIAARAAET
GEFEYTVE

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=315, Percent_Identity=33.6507936507937, Blast_Score=171, Evalue=2e-42,
Organism=Escherichia coli, GI1788943, Length=826, Percent_Identity=39.3462469733656, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI1787109, Length=489, Percent_Identity=36.1963190184049, Blast_Score=247, Evalue=2e-66,
Organism=Saccharomyces cerevisiae, GI6320464, Length=711, Percent_Identity=39.2405063291139, Blast_Score=466, Evalue=1e-132,
Organism=Saccharomyces cerevisiae, GI6323002, Length=780, Percent_Identity=34.6153846153846, Blast_Score=449, Evalue=1e-127,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 96641; Mature: 96510

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLKTLIAKLNPVCRKATERAASHCFARGHYEVDLEHLFLALLDESTGDVPLVLRASG
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCEEEEEEECC
VDPHALRADLERELERLKTGNTRTPVFSVHLSELFEQAWLIASLDSQIGRIRSGHLLLAL
CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTGPDLAQFAQRMSSQFARVRVDDLKHKFDEIAAGSSEAEPRHADADVAVPDGAAASGDA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAH
HHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALAR
CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRVLDDAITEAVRLSHRYISGRQLPDKAI
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHH
SVLDTACAKVALAHSSTPAAIDDAKKRIERIDAEIAALEREAASGAAHDARLAELREARD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
ADLKALAEDAARYEEERALVTEIGALRAELDAARESSADGKPVDVDATRAKLAERVDALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ARQGNQPMVPLQVDGHVVAEIVASWTGIPLGRMVKDEIETVLNLRDLLGARVIGQDHALG
HCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALADVLYGGERKLITINMSEYQ
HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHHHH
EAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA
HHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNKAPQELPDAETLAETLRPQLYKTFKPA
CCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHH
FLGRMKVIPYYPISDDVLAEIIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDS
HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
GARNVDHILNGTLLPEIAELVLSRIADGEAIVRIAARAAETGEFEYTVE
CCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
STPLKTLIAKLNPVCRKATERAASHCFARGHYEVDLEHLFLALLDESTGDVPLVLRASG
CCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCEEEEEEECC
VDPHALRADLERELERLKTGNTRTPVFSVHLSELFEQAWLIASLDSQIGRIRSGHLLLAL
CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTGPDLAQFAQRMSSQFARVRVDDLKHKFDEIAAGSSEAEPRHADADVAVPDGAAASGDA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAH
HHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALAR
CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRVLDDAITEAVRLSHRYISGRQLPDKAI
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHH
SVLDTACAKVALAHSSTPAAIDDAKKRIERIDAEIAALEREAASGAAHDARLAELREARD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
ADLKALAEDAARYEEERALVTEIGALRAELDAARESSADGKPVDVDATRAKLAERVDALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ARQGNQPMVPLQVDGHVVAEIVASWTGIPLGRMVKDEIETVLNLRDLLGARVIGQDHALG
HCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALADVLYGGERKLITINMSEYQ
HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHHHH
EAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA
HHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNKAPQELPDAETLAETLRPQLYKTFKPA
CCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHH
FLGRMKVIPYYPISDDVLAEIIELKLERIRRRIEANHKAAFEWDESLVDAVLARCTEVDS
HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
GARNVDHILNGTLLPEIAELVLSRIADGEAIVRIAARAAETGEFEYTVE
CCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]