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The map label for this gene is pilC [H]

Identifier: 126451673

GI number: 126451673

Start: 3435080

End: 3436297

Strand: Direct

Name: pilC [H]

Synonym: BURPS1106A_3532

Alternate gene names: 126451673

Gene position: 3435080-3436297 (Clockwise)

Preceding gene: 126452463

Following gene: 126455285

Centisome position: 86.13

GC content: 72.5

Gene sequence:

>1218_bases
ATGAGTACACGCGGACCGGCTTCGCCGATCGAGTCCCGATACCGTTGGGCGGGCGTGACGATCGACGGCGCGCGGCGGCG
CGGCATGTTGATCGCCGTCGATCCGTCCGCTGCGCGCGCGGCGCTCAAGCGCACGGGCGTCACCGTGCTGCGCCTCGAAG
CGCGCGGCCGGGCGCCGCAGCCCGCCGCACGGGCGAGCGAAGTCACCCGTTTCGCGCGGCAGCTCGCGGGACTCCTGCAC
GCGGGGCTCGCGCTTGCGCCGTCGCTCGAACTGCTCGCGCAAGCGACGCAGCGAAGCGAAATGCCCCGCGTCGCGGCGGG
CCTCGCGCGCGAGATCGTGGCGGGACGGCAGTTCTCCGCCGCGCTGCGCCGCTACCCGCGCCAGTTCGATCCGTTTTTCT
GTCAACTGGTCGCAGTCGGCGAAACGGCGGGAGCGCTCGCCGCGGTGCTCACACGGCTCGCCGACGATCGCGAGCGTGCA
GCCGCGCAATATGCGCGCGTCAAAGGCGCGCTCGCTTACCCGGCCGCCGTGCTGCTGTTCGCGCTCGCGATCACCGCCGC
ATTGCTGGTCTGGGTGGTGCCGACGTTCGAACAGATCTTCGCGGGCTTCGGCGCCCCGCTGCCTGCGCCGACCCGTTTCG
TCCTCGCGCTGTCGGCCGGCGTGACGCGCTGGAGCGCACCTGCCGCCGCGGCCGCGCTATTCGCCTGCGTTGCCGTTCGC
CATGCGGCGCGCCGTTCCGCAGCCGCGCGCGTCGCGCTCGCGCGGACGCTGCTGCGCGCGCCGTTCGTCGGGCCGCTCGT
GCAGACGCTCGCCGCCGCCCGATGGAGCCGCGCGCTCGGCACGTTGCTCGCCGCCGGCACGCCGCTCACCGACGCATTCG
CGGCGCTGTCGAACGCGACCGGCAACCCGCGTTTCGATCTCGCGACAGCCGGCATCGCCGCACGGGTGCTGCATGGCGAA
CGGCTCGCCCGCGCGATGCGCGCCGAAGGCTGCTTCCCTGACGATCTCGTCCAGCCGATCGCCGTCGCCGAGGAATCGGG
CACGCTGGACACAATGCTCATCGACGCCGCGACACTCTGCGATCGCCGCGTCGACGAACGGATCAGCGCGCTCGCGAACC
TGTGCGAACCCGTCGTGATCGTCGTGCTGGGCGCGCTGATCGGCGCGCTCGTCGTCGCGATGTACTTGCCGATCGTCCAG
CTCGGCAACGTGGTGTAG

Upstream 100 bases:

>100_bases
CGCGCGCCGAAGGCATGGCGAGCCTGCGCGATGCGGCACTCGCCCGCGTTCGCGACGGCACGACGAGCTTGAGCGAAGCG
CTCGCCACGACGGAGGCGGC

Downstream 100 bases:

>100_bases
CATCGCAGCCGAATCCGACTCCATTTGCGATGCCAACCGCCTCGATGACGCCCAATCCGTTCCTTTCCGGCTCGCCCGAA
CATGCGGCGGCGGCCGGGCC

Product: type IV pilus biogenesis protein PilC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSTRGPASPIESRYRWAGVTIDGARRRGMLIAVDPSAARAALKRTGVTVLRLEARGRAPQPAARASEVTRFARQLAGLLH
AGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFDPFFCQLVAVGETAGALAAVLTRLADDRERA
AAQYARVKGALAYPAAVLLFALAITAALLVWVVPTFEQIFAGFGAPLPAPTRFVLALSAGVTRWSAPAAAAALFACVAVR
HAARRSAAARVALARTLLRAPFVGPLVQTLAAARWSRALGTLLAAGTPLTDAFAALSNATGNPRFDLATAGIAARVLHGE
RLARAMRAEGCFPDDLVQPIAVAEESGTLDTMLIDAATLCDRRVDERISALANLCEPVVIVVLGALIGALVVAMYLPIVQ
LGNVV

Sequences:

>Translated_405_residues
MSTRGPASPIESRYRWAGVTIDGARRRGMLIAVDPSAARAALKRTGVTVLRLEARGRAPQPAARASEVTRFARQLAGLLH
AGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFDPFFCQLVAVGETAGALAAVLTRLADDRERA
AAQYARVKGALAYPAAVLLFALAITAALLVWVVPTFEQIFAGFGAPLPAPTRFVLALSAGVTRWSAPAAAAALFACVAVR
HAARRSAAARVALARTLLRAPFVGPLVQTLAAARWSRALGTLLAAGTPLTDAFAALSNATGNPRFDLATAGIAARVLHGE
RLARAMRAEGCFPDDLVQPIAVAEESGTLDTMLIDAATLCDRRVDERISALANLCEPVVIVVLGALIGALVVAMYLPIVQ
LGNVV
>Mature_404_residues
STRGPASPIESRYRWAGVTIDGARRRGMLIAVDPSAARAALKRTGVTVLRLEARGRAPQPAARASEVTRFARQLAGLLHA
GLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAALRRYPRQFDPFFCQLVAVGETAGALAAVLTRLADDRERAA
AQYARVKGALAYPAAVLLFALAITAALLVWVVPTFEQIFAGFGAPLPAPTRFVLALSAGVTRWSAPAAAAALFACVAVRH
AARRSAAARVALARTLLRAPFVGPLVQTLAAARWSRALGTLLAAGTPLTDAFAALSNATGNPRFDLATAGIAARVLHGER
LARAMRAEGCFPDDLVQPIAVAEESGTLDTMLIDAATLCDRRVDERISALANLCEPVVIVVLGALIGALVVAMYLPIVQL
GNVV

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=397, Percent_Identity=28.463476070529, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1786295, Length=392, Percent_Identity=30.1020408163265, Blast_Score=141, Evalue=7e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42498; Mature: 42367

Theoretical pI: Translated: 11.56; Mature: 11.56

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRGPASPIESRYRWAGVTIDGARRRGMLIAVDPSAARAALKRTGVTVLRLEARGRAPQ
CCCCCCCCHHHHHHEEECEEEECCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCC
PAARASEVTRFARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSA
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHH
ALRRYPRQFDPFFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLF
HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAITAALLVWVVPTFEQIFAGFGAPLPAPTRFVLALSAGVTRWSAPAAAAALFACVAVR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HAARRSAAARVALARTLLRAPFVGPLVQTLAAARWSRALGTLLAAGTPLTDAFAALSNAT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
GNPRFDLATAGIAARVLHGERLARAMRAEGCFPDDLVQPIAVAEESGTLDTMLIDAATLC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
DRRVDERISALANLCEPVVIVVLGALIGALVVAMYLPIVQLGNVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STRGPASPIESRYRWAGVTIDGARRRGMLIAVDPSAARAALKRTGVTVLRLEARGRAPQ
CCCCCCCHHHHHHEEECEEEECCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCC
PAARASEVTRFARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSA
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHH
ALRRYPRQFDPFFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPAAVLLF
HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAITAALLVWVVPTFEQIFAGFGAPLPAPTRFVLALSAGVTRWSAPAAAAALFACVAVR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HAARRSAAARVALARTLLRAPFVGPLVQTLAAARWSRALGTLLAAGTPLTDAFAALSNAT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
GNPRFDLATAGIAARVLHGERLARAMRAEGCFPDDLVQPIAVAEESGTLDTMLIDAATLC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
DRRVDERISALANLCEPVVIVVLGALIGALVVAMYLPIVQLGNVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]