Click here to switch to the map view.

The map label for this gene is ybbO [C]

Identifier: 126451605

GI number: 126451605

Start: 390925

End: 391638

Strand: Direct

Name: ybbO [C]

Synonym: BURPS1106A_0426

Alternate gene names: 126451605

Gene position: 390925-391638 (Clockwise)

Preceding gene: 126454650

Following gene: 126455213

Centisome position: 9.8

GC content: 70.59

Gene sequence:

>714_bases
ATGAATCTGAATGATGCCGTCGTACTGGTGACCGGCGCGAATCGCGGCCTGGGGCTCGCGTTCGTCGAGGGGCTGAAGGC
CGCGGGCGCGAAGAAAATCTATGCGGCCGCGCGCGATCCGGCGCGCGTGACGACGCCCGGCGTGCAGCCGGTGCGGCTCG
ACGTCACGCGCGCGCAAGATATCGCCGCCGCCGCGCGCGAGTTGCGCGACGTCAATCTGCTCGTCAACAACGCGGGCATT
TTCCGGATGGGCTCGCTGCTCGCGGAGGCGGACGGCGGCGGCCTGCAGGCGCAGCTCGACACGAATTTCTTCGGCCCGCT
CGCGATGGCGCGTGCGTTCGCGCCGGTGCTGCGCGAGAACGGCGGCGGCGCGATCATCAACGTGCTGTCGGTGCTGTCGT
GGCTCGGCTTGCCGAATACGGGCGCGTACGGCATTTCGAAGGCGGCCGCGTGGGCTGCGACGAACGCGATCCGCAACGAG
CTGCGCGAGCAGCGCACGCGCGTGCTCGCGCTGCATTCGGCGTACATCGATACCGACATGGTCGCGCACGCGCAGGGCGT
GCCGAAGAATCGCCCGGAGGACGTCGTCCGGCAGACGCTCGACGCGCTCGCGGCCGGCCGCGACGAAGTGCTCGTCGATG
CGCTGACGCGCGACGTGAAGGCGGGGTTGTCGGCCGAGCCGGCGGTCTACACGCAGCCGCCGACGGGCGCGTGA

Upstream 100 bases:

>100_bases
CCGTGCGCCGCGGCGTTCGACGCGCGGCGCACGCTTGAACGAGACAGGCGGCGGCAGGCGGGCGTCGCGCGAATCCTGGG
TCTTGCTGGAGAGAGTCGAG

Downstream 100 bases:

>100_bases
CGGTGATACGGCGGCACGCGGCGCGCGTGCGGCACCGGCGTTCGGGACGAACGGGCGAATGGATGAACGGTGTCGCGCAG
GGCGGCAGGGCGGCTCGCCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNLNDAVVLVTGANRGLGLAFVEGLKAAGAKKIYAAARDPARVTTPGVQPVRLDVTRAQDIAAAARELRDVNLLVNNAGI
FRMGSLLAEADGGGLQAQLDTNFFGPLAMARAFAPVLRENGGGAIINVLSVLSWLGLPNTGAYGISKAAAWAATNAIRNE
LREQRTRVLALHSAYIDTDMVAHAQGVPKNRPEDVVRQTLDALAAGRDEVLVDALTRDVKAGLSAEPAVYTQPPTGA

Sequences:

>Translated_237_residues
MNLNDAVVLVTGANRGLGLAFVEGLKAAGAKKIYAAARDPARVTTPGVQPVRLDVTRAQDIAAAARELRDVNLLVNNAGI
FRMGSLLAEADGGGLQAQLDTNFFGPLAMARAFAPVLRENGGGAIINVLSVLSWLGLPNTGAYGISKAAAWAATNAIRNE
LREQRTRVLALHSAYIDTDMVAHAQGVPKNRPEDVVRQTLDALAAGRDEVLVDALTRDVKAGLSAEPAVYTQPPTGA
>Mature_237_residues
MNLNDAVVLVTGANRGLGLAFVEGLKAAGAKKIYAAARDPARVTTPGVQPVRLDVTRAQDIAAAARELRDVNLLVNNAGI
FRMGSLLAEADGGGLQAQLDTNFFGPLAMARAFAPVLRENGGGAIINVLSVLSWLGLPNTGAYGISKAAAWAATNAIRNE
LREQRTRVLALHSAYIDTDMVAHAQGVPKNRPEDVVRQTLDALAAGRDEVLVDALTRDVKAGLSAEPAVYTQPPTGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=203, Percent_Identity=30.0492610837438, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=30.0518134715026, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082160, Length=220, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24651139, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24799; Mature: 24799

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNDAVVLVTGANRGLGLAFVEGLKAAGAKKIYAAARDPARVTTPGVQPVRLDVTRAQD
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEHHHHHH
IAAAARELRDVNLLVNNAGIFRMGSLLAEADGGGLQAQLDTNFFGPLAMARAFAPVLREN
HHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
GGGAIINVLSVLSWLGLPNTGAYGISKAAAWAATNAIRNELREQRTRVLALHSAYIDTDM
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAHAQGVPKNRPEDVVRQTLDALAAGRDEVLVDALTRDVKAGLSAEPAVYTQPPTGA
HHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MNLNDAVVLVTGANRGLGLAFVEGLKAAGAKKIYAAARDPARVTTPGVQPVRLDVTRAQD
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEHHHHHH
IAAAARELRDVNLLVNNAGIFRMGSLLAEADGGGLQAQLDTNFFGPLAMARAFAPVLREN
HHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
GGGAIINVLSVLSWLGLPNTGAYGISKAAAWAATNAIRNELREQRTRVLALHSAYIDTDM
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAHAQGVPKNRPEDVVRQTLDALAAGRDEVLVDALTRDVKAGLSAEPAVYTQPPTGA
HHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA