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The map label for this gene is cmpR [H]

Identifier: 126451598

GI number: 126451598

Start: 2140537

End: 2141439

Strand: Reverse

Name: cmpR [H]

Synonym: BURPS1106A_2158

Alternate gene names: 126451598

Gene position: 2141439-2140537 (Counterclockwise)

Preceding gene: 126454830

Following gene: 126455420

Centisome position: 53.69

GC content: 73.53

Gene sequence:

>903_bases
ATGACCCCAGATCAACTGATAACATTCGCCGCGGTCGCCGAGCACCGGAACATCAGCCGCGCGGCGCTCGCGCTGCATCT
GTCGCAGCCCGCGGTGTCCGGCCAGTTGCGCCAGTTGCAGGACGAGTTCGGCGAGCCGCTGTACCAGCGCGACGGGCGCG
GCGTGCGGCTCACGCCGGTCGGCGAGGCGCTCGCGCGCCATGCGTCGCAACTGCGCGACACGTTCGCGCAGGCGCGCGCG
TACCGCGACGCGGTGCGCGGGCTCGAGCGCGGGACACTGCGCATCGGCGCGAGCACGACGCCCGCGAGCTACCTGCTGCC
GTATCTGCTCGCCGCGTTTCAGCCGCTCGCGCCGGAGGTCGCGATCCAGACGATGAGCGGCAATACGTCGGATGTCGTCG
CGTCGCTCGCGTCGCTCGACATCGCGCTGATCGAGGGGCCGCCCGGCGACGCGCTGCCGGCCGGCACGACGGTGCACGAA
TGGCGCGAGGACGAGATCGTCGCGATCGTGCCGGCGTCGCATCCGCTCGCCGCGCCCGGCGCGCCGGGCCGCGCGCGGGC
GACGCTCGCCGCGCTCGCCGCCTATCCGCTCGTGCTGCGCGAGGCGGGCTCGGGCGTGCGCCAGCTCGTCGAGCGTGCGT
TCGCGCGTGCGGCGACGCCGCTTGCGGTCGCGTTCGAGATCGCGGGCGTCGAGGCGGTGAAGGAAGCGGTGCGCGCGGGA
ATGGGCGTGGGTTTCGTCTCCGCGATGTCGCTGCGGCACGACGACGCGGCGCTCGCGATGGTGTCGATCGCGCCCGAGCC
GCTCACGCGCCATTTCTCGATTCTCGTGCCGCACGGCGCGACGCCGTCGCGCGTCGCCACGCGGTTTCTCGAACTGTGCA
TCGCCCAGGCCCGAGCCGCCTGA

Upstream 100 bases:

>100_bases
TTTTTCGGGTGACGATGGGCCTAATCCTAAAATGAATATATCGATATGAAAAATCGTCATTTGTCGCGTAAAATATCCGG
AAATCCGATATTTCAGAGCG

Downstream 100 bases:

>100_bases
CGGGCGGCGCGCCGTGGCGCGAGCGGGCAGGCGGGGCGCGGGTTCGATCGCCCGCGAACGACTAGCGCCGGCGGCCGTCG
CCCGCGCGGCGGCTCGGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPVGEALARHASQLRDTFAQARA
YRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPEVAIQTMSGNTSDVVASLASLDIALIEGPPGDALPAGTTVHE
WREDEIVAIVPASHPLAAPGAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRAG
MGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVATRFLELCIAQARAA

Sequences:

>Translated_300_residues
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPVGEALARHASQLRDTFAQARA
YRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPEVAIQTMSGNTSDVVASLASLDIALIEGPPGDALPAGTTVHE
WREDEIVAIVPASHPLAAPGAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRAG
MGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVATRFLELCIAQARAA
>Mature_299_residues
TPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPVGEALARHASQLRDTFAQARAY
RDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPEVAIQTMSGNTSDVVASLASLDIALIEGPPGDALPAGTTVHEW
REDEIVAIVPASHPLAAPGAPGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRAGM
GVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVATRFLELCIAQARAA

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=305, Percent_Identity=31.1475409836066, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI157672245, Length=305, Percent_Identity=31.1475409836066, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787530, Length=267, Percent_Identity=28.0898876404494, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=27.4725274725275, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788296, Length=310, Percent_Identity=27.741935483871, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787879, Length=287, Percent_Identity=28.9198606271777, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790208, Length=276, Percent_Identity=28.9855072463768, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081904, Length=205, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=22.5255972696246, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788887, Length=172, Percent_Identity=32.5581395348837, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787601, Length=222, Percent_Identity=26.1261261261261, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082132, Length=251, Percent_Identity=24.7011952191235, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=177, Percent_Identity=27.683615819209, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788626, Length=243, Percent_Identity=28.8065843621399, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31561; Mature: 31429

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPV
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCEEECHH
GEALARHASQLRDTFAQARAYRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCHH
AIQTMSGNTSDVVASLASLDIALIEGPPGDALPAGTTVHEWREDEIVAIVPASHPLAAPG
EEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCC
APGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRAG
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
MGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVATRFLELCIAQARAA
CCHHHHHHHHHCCCCHHEEEEEECCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPV
CHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCEEECHH
GEALARHASQLRDTFAQARAYRDAVRGLERGTLRIGASTTPASYLLPYLLAAFQPLAPEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCHH
AIQTMSGNTSDVVASLASLDIALIEGPPGDALPAGTTVHEWREDEIVAIVPASHPLAAPG
EEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCC
APGRARATLAALAAYPLVLREAGSGVRQLVERAFARAATPLAVAFEIAGVEAVKEAVRAG
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
MGVGFVSAMSLRHDDAALAMVSIAPEPLTRHFSILVPHGATPSRVATRFLELCIAQARAA
CCHHHHHHHHHCCCCHHEEEEEECCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]