Click here to switch to the map view.

The map label for this gene is ssuC [H]

Identifier: 126451586

GI number: 126451586

Start: 1796528

End: 1797337

Strand: Direct

Name: ssuC [H]

Synonym: BURPS1106A_1837

Alternate gene names: 126451586

Gene position: 1796528-1797337 (Clockwise)

Preceding gene: 126454735

Following gene: 126452550

Centisome position: 45.04

GC content: 68.15

Gene sequence:

>810_bases
ATGACAACGACGCACTCGCGCGCGCACTTCGCCGCTCGCCGCGCCGCGCGCGCGGTCGCGCCTTGGCTCGTGCCGCTTGC
GCTCGTGCTCGCGTGGGAATTCGCCGCGCGCGCGGGCGCGCTGTCGAGCCGCGTGCTGCCCGAGCCGCTTGCCGTCGTGC
GCGCGGCGTGGGCGCTCGTCGAATCGGGCGACATGTGGGCGAACGTGAAGGTCAGCACGTGGCGCGCGCTCGTCGGCTTT
GCGATCGGCGGCGGCGTCGGGCTCGCGCTCGGTCTCGCCACCGGGCTTTCCAAGGCCGCCGAAGTCGCGCTCGATTCGAC
GATCCAGATGATCCGCAACATTCCGGCGCTCGCGATGATTCCGCTCGTGATTCTGTGGTTCGGCATCGACGAGAAGGCCA
AGCTCTTCCTCGTCGCGCTCGGCGTGTTCTTTCCCGTCTACATCAACACGTATCACGGCATTCGTTCGGTCGACGCGGGC
CTCGTCGAGATGGCGAGGAGCTACGGCGTGAGGGGCTTCGCGCTCTATCGCGACGTGATCCTGCCGGGCGCGCTGCCGTC
GATCCTCGTCGGCGTGCGCTTCGCGCTCGGGCTGATGTGGGTGATGCTGATCGTCGCCGAAACGATCTCCGCGCAATCGG
GCATCGGCTACATGACGATGAACGCGCGCGAATTCTTGCAAACGGACGTGGTGGTGGTCGGCATCCTGCTGTACGCGGTG
CTCGGCAAGCTCGCCGACGTGCTCGCGAAGTGGCTCGAGCGCGCGACGCTGCGCTGGCTCCCCGCGCATCAACCGGGAGC
CCATGCATGA

Upstream 100 bases:

>100_bases
ACACGCGCCGCGCGGGGCCGCTGTCGGGGCCGTTCGGCGAAGTCGTCGGCAACCAGTATCTGCCGAAGGCGAGCCAGAGC
TGAGCGAGGAGGGCATCGAG

Downstream 100 bases:

>100_bases
CTGGCACCACGCTGGCCGCCACGTACGGCCCGATCTCGGGCGCGGACCTCGAAGCCGAGCTCGCGCAGCCGCGCATCGCC
GACGGTGATGCGCAGGACGC

Product: aliphatic sulfonates ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTTTHSRAHFAARRAARAVAPWLVPLALVLAWEFAARAGALSSRVLPEPLAVVRAAWALVESGDMWANVKVSTWRALVGF
AIGGGVGLALGLATGLSKAAEVALDSTIQMIRNIPALAMIPLVILWFGIDEKAKLFLVALGVFFPVYINTYHGIRSVDAG
LVEMARSYGVRGFALYRDVILPGALPSILVGVRFALGLMWVMLIVAETISAQSGIGYMTMNAREFLQTDVVVVGILLYAV
LGKLADVLAKWLERATLRWLPAHQPGAHA

Sequences:

>Translated_269_residues
MTTTHSRAHFAARRAARAVAPWLVPLALVLAWEFAARAGALSSRVLPEPLAVVRAAWALVESGDMWANVKVSTWRALVGF
AIGGGVGLALGLATGLSKAAEVALDSTIQMIRNIPALAMIPLVILWFGIDEKAKLFLVALGVFFPVYINTYHGIRSVDAG
LVEMARSYGVRGFALYRDVILPGALPSILVGVRFALGLMWVMLIVAETISAQSGIGYMTMNAREFLQTDVVVVGILLYAV
LGKLADVLAKWLERATLRWLPAHQPGAHA
>Mature_268_residues
TTTHSRAHFAARRAARAVAPWLVPLALVLAWEFAARAGALSSRVLPEPLAVVRAAWALVESGDMWANVKVSTWRALVGFA
IGGGVGLALGLATGLSKAAEVALDSTIQMIRNIPALAMIPLVILWFGIDEKAKLFLVALGVFFPVYINTYHGIRSVDAGL
VEMARSYGVRGFALYRDVILPGALPSILVGVRFALGLMWVMLIVAETISAQSGIGYMTMNAREFLQTDVVVVGILLYAVL
GKLADVLAKWLERATLRWLPAHQPGAHA

Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=246, Percent_Identity=66.6666666666667, Blast_Score=308, Evalue=3e-85,
Organism=Escherichia coli, GI1786564, Length=210, Percent_Identity=35.2380952380952, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28896; Mature: 28764

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTHSRAHFAARRAARAVAPWLVPLALVLAWEFAARAGALSSRVLPEPLAVVRAAWALV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ESGDMWANVKVSTWRALVGFAIGGGVGLALGLATGLSKAAEVALDSTIQMIRNIPALAMI
HCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
PLVILWFGIDEKAKLFLVALGVFFPVYINTYHGIRSVDAGLVEMARSYGVRGFALYRDVI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
LPGALPSILVGVRFALGLMWVMLIVAETISAQSGIGYMTMNAREFLQTDVVVVGILLYAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHH
LGKLADVLAKWLERATLRWLPAHQPGAHA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TTTHSRAHFAARRAARAVAPWLVPLALVLAWEFAARAGALSSRVLPEPLAVVRAAWALV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ESGDMWANVKVSTWRALVGFAIGGGVGLALGLATGLSKAAEVALDSTIQMIRNIPALAMI
HCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
PLVILWFGIDEKAKLFLVALGVFFPVYINTYHGIRSVDAGLVEMARSYGVRGFALYRDVI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
LPGALPSILVGVRFALGLMWVMLIVAETISAQSGIGYMTMNAREFLQTDVVVVGILLYAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHH
LGKLADVLAKWLERATLRWLPAHQPGAHA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10506196; 8905232; 9278503 [H]