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The map label for this gene is nodJ [H]

Identifier: 126451561

GI number: 126451561

Start: 1809051

End: 1809887

Strand: Reverse

Name: nodJ [H]

Synonym: BURPS1106A_1853

Alternate gene names: 126451561

Gene position: 1809887-1809051 (Counterclockwise)

Preceding gene: 126453723

Following gene: 126454393

Centisome position: 45.38

GC content: 65.95

Gene sequence:

>837_bases
ATGGATACACGCCACTACACGCCGTCGCCGACGCTCGCTGCGCGCCGGCGCGAATCGGCGTTCGCACTCGCGCTGCCCGC
GAACGCCACCAACTGGATCGCCGTCTGGCGGCGCAACTACCTCGTCTGGCAAAAGCTGGCGATCGCATCGATGTTCGGCA
ATCTCGCCGATCCGATGATCTACCTGTTCGGCCTCGGGCTCGGCCTCGGGCTGATGGTCGGGCACGTCGAGGGCGTGTCG
TACATCGCGTTCCTCGCGGCCGGAACGGTCGGCTCGAGCGTGATGATCTCGGCGAGCTTCGAATCGATGTACTCGGGCTT
CTCGCGAATGCACGTGCAACGCACCTGGGAAGCGATCATGCATACGCCGCTGTCGCTCGGCGACATCGTGCTCGGCGAGA
TCGTCTGGGCCGCGAGCAAGGCAATGCTGTCGGGCGCGGCGATCATGCTCGTCGCCGGCGTCCTCGGCTACGCGAAGTTT
CCGTCGATGCTCGTCGCGCTGCCGGTGATCGCGCTCGCCGGCATCGCGTTCGCGAGCCTCGCGATGATCGTCACCGCGCT
CGCGCCGTCCTACGATTTCTTCATGTTCTATCAAACGCTCGCGCTGACCCCGATGCTGCTGCTGTCGGGCGTGTTCTTCC
CGCTCGCGCAGTTGCCCGAATTCGCGCAACACATCGCGCACGCGCTGCCGCTCTCGAATGCGGTCGACCTGATTCGCCCG
GCGATGCTCGATCGCCCGGCAACCGACGTCGCGCGCCACGTCGCGATACTCGCCGCGTATGCACTCGGCGGCTTCTTCGT
CTGTGCGCGCCTGTTCAGGCGCAGGATGATGCGCTGA

Upstream 100 bases:

>100_bases
CGCCTGAAAGGCCGCGTCGGCCTGCGCTATCTGCACCGCCCCGCGAATCTCGAAGACGTATTCCTGCGGCTGACCGGCCG
CGAGATGCTGGATTGAAACG

Downstream 100 bases:

>100_bases
CCGAACCGGGTGGCCCTGGCCGCGTTCGTCGCGCGCCGCGTGCCGCGCCGGGCATGCCGGCGGTTCGGGCCGCGCCGGTG
CGCCGCGCGGCTGTCCATGC

Product: nodulation ABC transporter NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDTRHYTPSPTLAARRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVS
YIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIVWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGIAFASLAMIVTALAPSYDFFMFYQTLALTPMLLLSGVFFPLAQLPEFAQHIAHALPLSNAVDLIRP
AMLDRPATDVARHVAILAAYALGGFFVCARLFRRRMMR

Sequences:

>Translated_278_residues
MDTRHYTPSPTLAARRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVS
YIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIVWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGIAFASLAMIVTALAPSYDFFMFYQTLALTPMLLLSGVFFPLAQLPEFAQHIAHALPLSNAVDLIRP
AMLDRPATDVARHVAILAAYALGGFFVCARLFRRRMMR
>Mature_278_residues
MDTRHYTPSPTLAARRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVS
YIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIVWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGIAFASLAMIVTALAPSYDFFMFYQTLALTPMLLLSGVFFPLAQLPEFAQHIAHALPLSNAVDLIRP
AMLDRPATDVARHVAILAAYALGGFFVCARLFRRRMMR

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=249, Percent_Identity=22.4899598393574, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30164; Mature: 30164

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRHYTPSPTLAARRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMI
CCCCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLFGLGLGLGLMVGHVEGVSYIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH
HTPLSLGDIVLGEIVWAASKAMLSGAAIMLVAGVLGYAKFPSMLVALPVIALAGIAFASL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMIVTALAPSYDFFMFYQTLALTPMLLLSGVFFPLAQLPEFAQHIAHALPLSNAVDLIRP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AMLDRPATDVARHVAILAAYALGGFFVCARLFRRRMMR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTRHYTPSPTLAARRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMI
CCCCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLFGLGLGLGLMVGHVEGVSYIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH
HTPLSLGDIVLGEIVWAASKAMLSGAAIMLVAGVLGYAKFPSMLVALPVIALAGIAFASL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMIVTALAPSYDFFMFYQTLALTPMLLLSGVFFPLAQLPEFAQHIAHALPLSNAVDLIRP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AMLDRPATDVARHVAILAAYALGGFFVCARLFRRRMMR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]