| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
Click here to switch to the map view.
The map label for this gene is 126451518
Identifier: 126451518
GI number: 126451518
Start: 1199772
End: 1201034
Strand: Reverse
Name: 126451518
Synonym: BURPS1106A_1216
Alternate gene names: NA
Gene position: 1201034-1199772 (Counterclockwise)
Preceding gene: 126451841
Following gene: 126452639
Centisome position: 30.11
GC content: 71.1
Gene sequence:
>1263_bases ATGACGGTCCGGCATGCGGTCAGCGCGCGTAGCCTGCGCGCCCTCGACTGGCTCAACTTCTTCGTCGCGAACGTGCAGAC AGGCTTCGGTCCGTTCATCGCGTCGTATCTCGCGTCGCACAAGTGGACGCAGGGCGAAATCGGCATGGTGCTGTCGATCG GCACGATCAGCGCGATGGTGAGCCAGGTGCCCGGCGGCGCGGCCGTCGATGCGCTGAAGAACAAGAAAGGCGCCGCCGCG TGGGCGATCGCCGCGATCATCCTGTCCGCGGTGCTGCTCGCCGCGAGCCCGACCGTCGTGCCCGTGATCGCGGCCGAGGT GTTCCACGGCTTCGCGAGCTGCATGCTCGTGCCGGCAATGGCGGCGATCTCGTTCGCGCTCGTCGGCCGCGAGAGCCTGG GCGACCGGCTCGGCCGCAACGCGCGCTGGGCGTCGCTCGGCAGCGCGGTCGCGGCGGGTCTGATGGGGCTCACGGGCGAG TACTTCTCCGCGCGCGCGGTGTTCTGGCTGACGGCGGCCCTCGCGCTGCCCGCGCTCGTCGCGCTCGCGATGATCGAGCC GACGCACCATCATCATCACGCGGCGCCACGCGCGTCGGCGCCACGCGCCGACGAAGACGAAGACGAAGAACGCGAAACGC TGCGCGAACTGCTGCGCGACAAGCGGATGCTGATCTTCGCCGCCTGCGTCGTGTTGTTCCATCTGTCGAACGCGGCGATG CTGAACCTCGCCGCGGGCGAAGTGACGGCGGGCATGGGCGAGAACGTGCAGCTCGTGATCGCCGCGTGCATCATCGTCCC GCAGGCGATCGTCGCGATGCTTTCGCCGTGGGTCGGACGCTCCGCGCAGCGCTGGGGCCGCCGGCCGATCCTGCTGCTCG GTTTCGCCGCGCTGCCGCTGCGCGCGCTGCTGTTCGCCGGCGTCTCGAGCCCGTACCTGCTCGTGCCGGTGCAGATGCTC GACGGCATCAGCGCCGCCGTGTTCGGCGTGATGCTGCCGCTCATCGCGGCGGACGTCGCGGGCGGCAAGGGGCGCTACAA CCTGTGCATCGGGCTCTTCGGACTCGCGGCGGGCGTCGGCGCGACGCTCAGCACCGCGCTCGCCGGCTTCGCGGCCGACC ACTTCGGCAACGCGATGAGCTTCTTCGGGCTCGCCGCCGCGGGCGCGCTCGCGACGCTGCTCGTGTGGTTCGCGATGCCC GAGACGCGCGACGCGGCGCTCGCCGAAGACGCTCGGCACTCGAGCGCCGAGCCGGCGCAGTAA
Upstream 100 bases:
>100_bases CGCCGCCCTATGCGGGCGACAAGCCGATCCTCGCCGTCTCGCCCGCGGCCGGCGGCGCTCCCGCCGCCGCGCCGGCCACC GCTCGAGCAGGTGCGAAACG
Downstream 100 bases:
>100_bases CGTCCCGCCCGTGATGCGACGGCGCGCGGGACGCGATGCGGGATGCGGCGGCACATGCATGCGTGCGCCCGGCGGCGTTG CGGGCGATATGGGCGATATG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGE YFSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRASAPRADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAM LNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQML DGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMP ETRDAALAEDARHSSAEPAQ
Sequences:
>Translated_420_residues MTVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGE YFSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRASAPRADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAM LNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQML DGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMP ETRDAALAEDARHSSAEPAQ >Mature_419_residues TVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAAW AIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGEY FSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRASAPRADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAML NLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQMLD GISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPE TRDAALAEDARHSSAEPAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43739; Mature: 43607
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGEYFSARAVFWLTAALALPALV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALAMIEPTHHHHHAAPRASAPRADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAM HHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE LNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPL EEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEHHHHHHHH RALLFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVG HHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH ATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRDAALAEDARHSSAEPAQ HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure TVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGEYFSARAVFWLTAALALPALV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALAMIEPTHHHHHAAPRASAPRADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAM HHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE LNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPL EEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEHHHHHHHH RALLFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVG HHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH ATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRDAALAEDARHSSAEPAQ HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]