Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 126445514

GI number: 126445514

Start: 2948

End: 3556

Strand: Reverse

Name: ydcN [H]

Synonym: BURPS668_A0004

Alternate gene names: 126445514

Gene position: 3556-2948 (Counterclockwise)

Preceding gene: 284159976

Following gene: 126443504

Centisome position: 0.11

GC content: 68.97

Gene sequence:

>609_bases
ATGGCAAGCTCTTCCGGCGCGCGGCGCACCCCCGCGCCCGCTTCCCCCGCCACCGGCGCGACGCCGCCGCGGGTCGGCGA
GCAAATCCAGCGCCTGCGCAACGAGCGCAAGCTCACGCTCGACGATCTGTCGCGCGCCGCCGGCGTGTCGAAATCGATGC
TGTCGGAGATCGAGCGCGACAAGGCGAATCCGACGATCGCCGTTGCCTGGCGGCTCACGAACGCACTCGGCATCAGCCTC
GACGAGCTGTTCGCGCAACCGAAGGCGCCCGAGACGATCCGCGTGGACGGCCCGCATGACATTCCGACGCTCGCCGGCCA
TGACGCGCAGTATCAATTGCGCGTCTGGGGGCCGATCGAACTCGCGGGCAAGTTCGAATGGTACGAGTTGACGCTGCCGG
CGAACGGCGCGCTCGTATCGAACCCGCATGAACCGGGCACACGCGAGCACCTGACCGTGCTGAACGGCGCCGTCGAAATC
GAAGCGGCGGGTACCGCGCGGCGGCTGAAGGCGGGCGACACCGCGCGCTACGCGGCCGACGGGCCGCATGCGATCCGCAA
CGCGGGCAAGAGCGAGGCGAAAGCGCTTCTCATCGTGATTCATCGCTAG

Upstream 100 bases:

>100_bases
GCTTGCTACTGTTATAGTCGGCCGTCGGGTTCAGCGTATTTTTCCTGTATTTCGAACTAAAATTCGAAATACCGAACAAC
TCTAAGCGAACGGAATTCAA

Downstream 100 bases:

>100_bases
CGCGGCGGCCAGCCGGCTGAATGGGCAGTTGCGCAAAATACTGTATATTCGTACAGTATACGCAAAACAGGAGCCCGCGA
TGACCGAACAGGATCTGGCC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MASSSGARRTPAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISL
DELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAVEI
EAAGTARRLKAGDTARYAADGPHAIRNAGKSEAKALLIVIHR

Sequences:

>Translated_202_residues
MASSSGARRTPAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISL
DELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAVEI
EAAGTARRLKAGDTARYAADGPHAIRNAGKSEAKALLIVIHR
>Mature_201_residues
ASSSGARRTPAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLD
ELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAVEIE
AAGTARRLKAGDTARYAADGPHAIRNAGKSEAKALLIVIHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=165, Percent_Identity=29.6969696969697, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21655; Mature: 21524

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSSGARRTPAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH
KANPTIAVAWRLTNALGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIE
CCCCEEEEEEEECCHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCEE
LAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAVEIEAAGTARRLKAGDTARYAAD
ECCCEEEEEEEECCCCCEECCCCCCCCCHHEEEECCEEEEEECCCHHHHCCCCCCCCCCC
GPHAIRNAGKSEAKALLIVIHR
CCHHHHHCCCCCCEEEEEEEEC
>Mature Secondary Structure 
ASSSGARRTPAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERD
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH
KANPTIAVAWRLTNALGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIE
CCCCEEEEEEEECCHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCEE
LAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAVEIEAAGTARRLKAGDTARYAAD
ECCCEEEEEEEECCCCCEECCCCCCCCCHHEEEECCEEEEEECCCHHHHCCCCCCCCCCC
GPHAIRNAGKSEAKALLIVIHR
CCHHHHHCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]