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The map label for this gene is rbsC [H]

Identifier: 126445181

GI number: 126445181

Start: 1451440

End: 1452525

Strand: Reverse

Name: rbsC [H]

Synonym: BURPS668_A1511

Alternate gene names: 126445181

Gene position: 1452525-1451440 (Counterclockwise)

Preceding gene: 126444203

Following gene: 126442376

Centisome position: 46.44

GC content: 75.14

Gene sequence:

>1086_bases
ATGAGCGGCGACATGAGCGGCGGCGCATGCGATCTCGGCCGCGCGGGCGCGGCGGCGCGGCGCTCGCCGGAGACGGCGGG
CGCGCCGGGCGCGCTTCCCGGCGCGCGCGGCTGGACGCCCGCGCGCCGCGTGCTGCTGCGCGGCGGCCCATGGCTTGCGC
TCGCGCTCGTGTTCGCGGGCTTTTCCGTCAGCTCGCCGCTGTTCGTCACGTTCGCGAACCTCGGCAACGTGCTGCAGCAA
AGCGCGGTCACCGGCCTGCTCGCGTTCGGCCTGACGATCGTGATGATCGGCGGCGGCGCGGATGCGATCAAGGGTGGGCT
CGATCTATCGATCGCCGCGAATCTCGGCCTGTGCGCGGCGGTATTCGCCGCCCTCACGCGCGGCGGCCACGGCGACGCGC
TCGCGCTCGCCGCGACTTGCGCGACGGGCGTCGCGGTCGGCGCGCTCAATGCATGGGCGGTCGCGTGGCTGCGCATCCCG
CCGCTCCTCGCGACGCTGGCGACGATGAACGTCTGCGCGGGTCTCGAGCTCGTGCTGACCGAGAACGCGCCGATATCGTC
GCCGAGCCCGCTCGCCGCCGCGCTCGTCGGCACGGGGCCGTTCGGCGCGCCGTGGCTCGCGTACGCGCTCGTCGGCGTCG
CGGCCGCGCTCGCCGCGCTCGCCCATCGCACCCGTTACGGGCTCGCGCTGCACGCGCTCGGCGCCCATCGCGCGGCCGCG
CTCGCCGCGGGCGTCGACGCGCGCCGCTACGTCGCGTCGAGCTATGTCGCGAGCGGCCTGTCCGCCGCGCTCGCCGCGCT
CGCGTCGTGCGCGCTGCTGAGCGGCAGCGCGCCGGGCGCGGGCGACTATCTGCTGCCCGTCGTCGCGGCGGTGCTGCTCG
GCGTCGTGTTCTCGCGCCGGCTCGTGCCGACGATTCCCGGCACGCTCGTCGCCGTGCTGTTCGTCGGCCTGCTCGCGAAC
GGCTTCCAGTTGAACAGCGTGTCGAGCTATTGGGTGAGCGGCGTCGAGGGCGCGCTGATCCTGTTCGTCGTCGCGGCCGT
CGCGCTGCTGCGCCGGCGCCGCTCGCAGGGAGCATTCGATGCGTGA

Upstream 100 bases:

>100_bases
ATGCGCGGCCCGGCGGCGGCGCGGGCGCGCACGACGCGGCCGCGCGCACCGGGACGCCGGGCGCGGCGGGCGCGGCCTCG
TCCGCGGCGAAGGTGGCGAC

Downstream 100 bases:

>100_bases
CGCAACCGACCGTCTGTCGCGCCTCGCCGCGCTCGGCGCGCTCGCGGCCGTTCTCGCGTTCTTCGCCGTCGCGGCGCCCG
GCTTCGCGACGCTCGCGAAC

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSGDMSGGACDLGRAGAAARRSPETAGAPGALPGARGWTPARRVLLRGGPWLALALVFAGFSVSSPLFVTFANLGNVLQQ
SAVTGLLAFGLTIVMIGGGADAIKGGLDLSIAANLGLCAAVFAALTRGGHGDALALAATCATGVAVGALNAWAVAWLRIP
PLLATLATMNVCAGLELVLTENAPISSPSPLAAALVGTGPFGAPWLAYALVGVAAALAALAHRTRYGLALHALGAHRAAA
LAAGVDARRYVASSYVASGLSAALAALASCALLSGSAPGAGDYLLPVVAAVLLGVVFSRRLVPTIPGTLVAVLFVGLLAN
GFQLNSVSSYWVSGVEGALILFVVAAVALLRRRRSQGAFDA

Sequences:

>Translated_361_residues
MSGDMSGGACDLGRAGAAARRSPETAGAPGALPGARGWTPARRVLLRGGPWLALALVFAGFSVSSPLFVTFANLGNVLQQ
SAVTGLLAFGLTIVMIGGGADAIKGGLDLSIAANLGLCAAVFAALTRGGHGDALALAATCATGVAVGALNAWAVAWLRIP
PLLATLATMNVCAGLELVLTENAPISSPSPLAAALVGTGPFGAPWLAYALVGVAAALAALAHRTRYGLALHALGAHRAAA
LAAGVDARRYVASSYVASGLSAALAALASCALLSGSAPGAGDYLLPVVAAVLLGVVFSRRLVPTIPGTLVAVLFVGLLAN
GFQLNSVSSYWVSGVEGALILFVVAAVALLRRRRSQGAFDA
>Mature_360_residues
SGDMSGGACDLGRAGAAARRSPETAGAPGALPGARGWTPARRVLLRGGPWLALALVFAGFSVSSPLFVTFANLGNVLQQS
AVTGLLAFGLTIVMIGGGADAIKGGLDLSIAANLGLCAAVFAALTRGGHGDALALAATCATGVAVGALNAWAVAWLRIPP
LLATLATMNVCAGLELVLTENAPISSPSPLAAALVGTGPFGAPWLAYALVGVAAALAALAHRTRYGLALHALGAHRAAAL
AAGVDARRYVASSYVASGLSAALAALASCALLSGSAPGAGDYLLPVVAAVLLGVVFSRRLVPTIPGTLVAVLFVGLLANG
FQLNSVSSYWVSGVEGALILFVVAAVALLRRRRSQGAFDA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=319, Percent_Identity=33.5423197492163, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790524, Length=313, Percent_Identity=29.3929712460064, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=26.537216828479, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082395, Length=300, Percent_Identity=29.6666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=25.5520504731861, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=27.4096385542169, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787794, Length=288, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789992, Length=350, Percent_Identity=24.8571428571429, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693214, Length=227, Percent_Identity=31.7180616740088, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787793, Length=206, Percent_Identity=31.0679611650485, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35750; Mature: 35619

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGDMSGGACDLGRAGAAARRSPETAGAPGALPGARGWTPARRVLLRGGPWLALALVFAG
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHC
FSVSSPLFVTFANLGNVLQQSAVTGLLAFGLTIVMIGGGADAIKGGLDLSIAANLGLCAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCCCCEEHHHHHHHHHH
VFAALTRGGHGDALALAATCATGVAVGALNAWAVAWLRIPPLLATLATMNVCAGLELVLT
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
ENAPISSPSPLAAALVGTGPFGAPWLAYALVGVAAALAALAHRTRYGLALHALGAHRAAA
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAGVDARRYVASSYVASGLSAALAALASCALLSGSAPGAGDYLLPVVAAVLLGVVFSRR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
LVPTIPGTLVAVLFVGLLANGFQLNSVSSYWVSGVEGALILFVVAAVALLRRRRSQGAFD
CCCCCCHHHHHHHHHHHHHCCCEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
A
C
>Mature Secondary Structure 
SGDMSGGACDLGRAGAAARRSPETAGAPGALPGARGWTPARRVLLRGGPWLALALVFAG
CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHC
FSVSSPLFVTFANLGNVLQQSAVTGLLAFGLTIVMIGGGADAIKGGLDLSIAANLGLCAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCCCCEEHHHHHHHHHH
VFAALTRGGHGDALALAATCATGVAVGALNAWAVAWLRIPPLLATLATMNVCAGLELVLT
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
ENAPISSPSPLAAALVGTGPFGAPWLAYALVGVAAALAALAHRTRYGLALHALGAHRAAA
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAGVDARRYVASSYVASGLSAALAALASCALLSGSAPGAGDYLLPVVAAVLLGVVFSRR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
LVPTIPGTLVAVLFVGLLANGFQLNSVSSYWVSGVEGALILFVVAAVALLRRRRSQGAFD
CCCCCCHHHHHHHHHHHHHCCCEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]