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The map label for this gene is rnk [H]

Identifier: 126445041

GI number: 126445041

Start: 1218272

End: 1218670

Strand: Reverse

Name: rnk [H]

Synonym: BURPS668_A1288

Alternate gene names: 126445041

Gene position: 1218670-1218272 (Counterclockwise)

Preceding gene: 126443222

Following gene: 126445420

Centisome position: 38.97

GC content: 60.65

Gene sequence:

>399_bases
ATGAGAAACAGGATTTACCAACTCACCGAACTCGATGTCGCACGCCTCGAAAAGCATGCGGAACGCAACCCGCGCTATCA
GGAAATGCTCGACACGCTGCTCGAGCGCGCCGATATCGTCGAGCCGAACAAGATTCAGGCAAACGTCGTCACGATGAACT
CGCAGATCAAGCTGCTCGACGAGACAGCCGGCCAGGACAGGGCCTGGACCATCGTCTATCCGGACGCGGCCAATTTCGAG
CAAGGCCGATTGAACGTGTTTTCGCCGGTCGGCATGGCGCTTCTCGGCTCGCGCTGCGGCGAGCGGGTCAAAGTGACGCT
GCCGGGCGGCGCGGACGCGACGCTGAAGATCGTCGAGATCGTCTATCAACCGGAAGCGAGCGGCGACTACGCGCACTAA

Upstream 100 bases:

>100_bases
GCTTGATCTGACGGCAGTCTCCATCCCGGAGCCGCGTCAGTCAGGCTCCGGGCGATCCCGGGTTGGCCACGCCACCCAAG
CCGATCATTTGGAGACTGTC

Downstream 100 bases:

>100_bases
GGCCGCACGACGACGGATCGGCGGATGCGGCGCGGCCGCCGAACGATCGCCGGCCCGCGGCATGAGCGGCGACGAATCGG
CAACGGCCGCCACGCCAAAG

Product: regulator of nucleoside diphosphate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFE
QGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVYQPEASGDYAH

Sequences:

>Translated_132_residues
MRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFE
QGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVYQPEASGDYAH
>Mature_132_residues
MRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFE
QGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVYQPEASGDYAH

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=128, Percent_Identity=38.28125, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14829; Mature: 14829

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLD
CCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
ETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEI
CCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEE
VYQPEASGDYAH
EECCCCCCCCCC
>Mature Secondary Structure
MRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLD
CCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
ETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEI
CCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEE
VYQPEASGDYAH
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]