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The map label for this gene is rcsB [H]

Identifier: 126444900

GI number: 126444900

Start: 171921

End: 172583

Strand: Reverse

Name: rcsB [H]

Synonym: BURPS668_A0187

Alternate gene names: 126444900

Gene position: 172583-171921 (Counterclockwise)

Preceding gene: 126444429

Following gene: 126445258

Centisome position: 5.52

GC content: 54.6

Gene sequence:

>663_bases
ATGACTGCTTTCTCCATAAAGGTCATCATCGCGGATGATCACCCGGCTGTACTGACAGGCTTGCTACACGCCCTGGCTCC
CGTTAGTTCGATAGAAGTGGTAAGCGCGTGCAGGAACTCCACCGAACTGCTGGCGGCGCTCAACGAGCACCCTTGCGACG
TCGTCATATCCGATTACAGCATGCCGGACGACAATTTCGGAGATGGCATATCGCTGTTCTCGTATGTCCAAAGGCGGTAT
CCGGGCACGCGCCTGATCGCACTCACGATGATCAGCAATCCCGCGATCATTCAAAACCTGATATCGCACGGAATTTCAAC
GGTTCTCAGCAAGTCGGACGAAGTCGGCCACATCATTGCGGCGGTTCATGCCAGCTATGCCAAGGGATCCTATCTTTCGC
CGACTATGGAAGCGATCGTCAACAACGGGCACGGCAAGACACAGGGCGGGGAAGTTTCGCTGTCCCCGAGAGAAATGGAA
GTCGTCCGTTTGTTCACGTCCGGACTGTCGGTCAATGAAATCGCCAACCGCCTTAAGCGAAGCAAGCAGACCATCAGTTC
TCAGAAAGCCAACGCGATGCGAAAGCTCGGCCTGAACAGCGACATCGATCTTCTCAAATACGCGCTGAAGGTGAAACTGG
TCGAAGACACGACCAGCCATTGA

Upstream 100 bases:

>100_bases
CGACACCTCAAGCCACATGCATATGATCAATAGATCGCACCGCCCTCCATCCTAGTTTTGTTCTACGCAATCCCTTCCAA
TCATATGACTCAGGATCAGG

Downstream 100 bases:

>100_bases
CCGATGGCGGAAGCCGTCGCAGCGGTCTTTCGACATATGTGGCGGTCGCCCGCCAGACCATTGTCACGAACTCGCCGCGA
AGTGCATCACGCGTCATCCG

Product: LuxR response regulator receiver

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTAFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYSMPDDNFGDGISLFSYVQRRY
PGTRLIALTMISNPAIIQNLISHGISTVLSKSDEVGHIIAAVHASYAKGSYLSPTMEAIVNNGHGKTQGGEVSLSPREME
VVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGLNSDIDLLKYALKVKLVEDTTSH

Sequences:

>Translated_220_residues
MTAFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYSMPDDNFGDGISLFSYVQRRY
PGTRLIALTMISNPAIIQNLISHGISTVLSKSDEVGHIIAAVHASYAKGSYLSPTMEAIVNNGHGKTQGGEVSLSPREME
VVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGLNSDIDLLKYALKVKLVEDTTSH
>Mature_219_residues
TAFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYSMPDDNFGDGISLFSYVQRRYP
GTRLIALTMISNPAIIQNLISHGISTVLSKSDEVGHIIAAVHASYAKGSYLSPTMEAIVNNGHGKTQGGEVSLSPREMEV
VRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGLNSDIDLLKYALKVKLVEDTTSH

Specific function: Also stimulates ftsZ expression. This suggests that rcsB is a regulator implicated in the regulation of more than one cellular function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788546, Length=214, Percent_Identity=40.6542056074766, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI1790102, Length=201, Percent_Identity=31.3432835820896, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=25.9615384615385, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786747, Length=208, Percent_Identity=27.4038461538462, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788712, Length=205, Percent_Identity=25.3658536585366, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23715; Mature: 23584

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYS
CCEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCC
MPDDNFGDGISLFSYVQRRYPGTRLIALTMISNPAIIQNLISHGISTVLSKSDEVGHIIA
CCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
AVHASYAKGSYLSPTMEAIVNNGHGKTQGGEVSLSPREMEVVRLFTSGLSVNEIANRLKR
HHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHH
SKQTISSQKANAMRKLGLNSDIDLLKYALKVKLVEDTTSH
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCC
>Mature Secondary Structure 
TAFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYS
CEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCC
MPDDNFGDGISLFSYVQRRYPGTRLIALTMISNPAIIQNLISHGISTVLSKSDEVGHIIA
CCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
AVHASYAKGSYLSPTMEAIVNNGHGKTQGGEVSLSPREMEVVRLFTSGLSVNEIANRLKR
HHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHH
SKQTISSQKANAMRKLGLNSDIDLLKYALKVKLVEDTTSH
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]