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The map label for this gene is mcbR [H]

Identifier: 126444511

GI number: 126444511

Start: 1080490

End: 1081206

Strand: Reverse

Name: mcbR [H]

Synonym: BURPS668_A1124

Alternate gene names: 126444511

Gene position: 1081206-1080490 (Counterclockwise)

Preceding gene: 126445139

Following gene: 126443734

Centisome position: 34.57

GC content: 71.27

Gene sequence:

>717_bases
TTGGCGCCGCGTATCGTCCCGCCCGCCCTCGAGGCCATCGAACAGGAAACGATGGCCGACAAGGTCTACCAGCAACTCCG
CGAGGCGCTGATGAGCGGGCGCTTCGCGCCCGGCCAGGCGCTCAGCCTGCGCAGCGTCGCCGAGGCCGTCGGCTCGTCGA
CGATGCCCGTGCGCGCCGCGCTCACGCGGCTGCGCGCGGAGCGCGCGCTCGCCGACGGCCCGAATCGCGCGCTCGTCGTG
CCGCCGATGACGATCGAGATGCTCGACGAGTTGCGCGACGTGCGGATCGCGCTCGAAGGCTGCGTCGCCGAACGCGCGGC
GACACGGATGAGCGTCTCGCAGATCGCCGACGTGCGGCGCATCTGCGAGGCGATGAACGCGCACGTCGAAGCGGGCCGAA
GCCGCGCGTATCTGCAAAGCAATTTCGCGTTCCATAGCGCGATCTACGCGCACGGCGCGAGCGAGAACACGCTCGCGATC
ATTCGCAATCTATGGATGCGGATCGGCCCGTTCCTGAACATGATCGCGCTCGACGTGCCGCACATGCGGCGTTCGATGGA
CGCGCACCGCGCGATCGTCGACGCGCTCGAGCGCCGCGACGGCGCCGGCGCGCGCGCGGGCATCGCGCTCGACATCGGCG
GCGCCGCGCACGATCTCGCCGAGACGCTCGCGGCCGAACGCGCGCGTCTCGGCCCGCGCCGGCTCGCGAACGAATAG

Upstream 100 bases:

>100_bases
CCTGATCGTCGCGCGCTTGACTGCGGCCGTCGCATCGACAACACTGCGTAACATCTCAAGTGTGATCACGGATCACAGAT
CAAACCCAAAGGAGTTCATC

Downstream 100 bases:

>100_bases
CGCCGCGCGCATGCGGCGCCGCCCGCCTCGCGCGCGCATCACCAATATCGCGATGCGCATCGTGCGCATCGCCGAACAAG
AATCGCGATCACTCGGGAGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAPRIVPPALEAIEQETMADKVYQQLREALMSGRFAPGQALSLRSVAEAVGSSTMPVRAALTRLRAERALADGPNRALVV
PPMTIEMLDELRDVRIALEGCVAERAATRMSVSQIADVRRICEAMNAHVEAGRSRAYLQSNFAFHSAIYAHGASENTLAI
IRNLWMRIGPFLNMIALDVPHMRRSMDAHRAIVDALERRDGAGARAGIALDIGGAAHDLAETLAAERARLGPRRLANE

Sequences:

>Translated_238_residues
MAPRIVPPALEAIEQETMADKVYQQLREALMSGRFAPGQALSLRSVAEAVGSSTMPVRAALTRLRAERALADGPNRALVV
PPMTIEMLDELRDVRIALEGCVAERAATRMSVSQIADVRRICEAMNAHVEAGRSRAYLQSNFAFHSAIYAHGASENTLAI
IRNLWMRIGPFLNMIALDVPHMRRSMDAHRAIVDALERRDGAGARAGIALDIGGAAHDLAETLAAERARLGPRRLANE
>Mature_237_residues
APRIVPPALEAIEQETMADKVYQQLREALMSGRFAPGQALSLRSVAEAVGSSTMPVRAALTRLRAERALADGPNRALVVP
PMTIEMLDELRDVRIALEGCVAERAATRMSVSQIADVRRICEAMNAHVEAGRSRAYLQSNFAFHSAIYAHGASENTLAII
RNLWMRIGPFLNMIALDVPHMRRSMDAHRAIVDALERRDGAGARAGIALDIGGAAHDLAETLAAERARLGPRRLANE

Specific function: Important for biofilm formation. Represses expression of mcbA by binding to its promoter region, which prevents colanic acid overproduction and mucoidy [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=204, Percent_Identity=27.4509803921569, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25894; Mature: 25763

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRIVPPALEAIEQETMADKVYQQLREALMSGRFAPGQALSLRSVAEAVGSSTMPVRAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LTRLRAERALADGPNRALVVPPMTIEMLDELRDVRIALEGCVAERAATRMSVSQIADVRR
HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICEAMNAHVEAGRSRAYLQSNFAFHSAIYAHGASENTLAIIRNLWMRIGPFLNMIALDVP
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
HMRRSMDAHRAIVDALERRDGAGARAGIALDIGGAAHDLAETLAAERARLGPRRLANE
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure 
APRIVPPALEAIEQETMADKVYQQLREALMSGRFAPGQALSLRSVAEAVGSSTMPVRAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LTRLRAERALADGPNRALVVPPMTIEMLDELRDVRIALEGCVAERAATRMSVSQIADVRR
HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICEAMNAHVEAGRSRAYLQSNFAFHSAIYAHGASENTLAIIRNLWMRIGPFLNMIALDVP
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
HMRRSMDAHRAIVDALERRDGAGARAGIALDIGGAAHDLAETLAAERARLGPRRLANE
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]