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The map label for this gene is fliN [H]

Identifier: 126444393

GI number: 126444393

Start: 200463

End: 200810

Strand: Reverse

Name: fliN [H]

Synonym: BURPS668_A0217

Alternate gene names: 126444393

Gene position: 200810-200463 (Counterclockwise)

Preceding gene: 126445346

Following gene: 126442614

Centisome position: 6.42

GC content: 64.66

Gene sequence:

>348_bases
ATGGACTCGAACGAGCCGAACGACCTCGACGCACTGCTGGACGATCTGCCGGCGGATGCGCCGGCGGATACCGCAACGGC
GGCGCACGCACCGCGCCGCGACCCGCGTCAACTGCTGGCCAAGATCCCGGTCCAGCTCACGCTTGAAGTGGGAACGGCCA
CCGTCTCCCTCGCGGAACTGATGAACATCGATGAAGGCACTGTGCTCGAACTCGACAGGCTGGCCGGCGAGCCGCTCCTC
GTCAAGGTCAACGGCACGACCGTCGGCCACGCGGAAGTCGTCGTGTCCGGCGAGAACTACGGGCTCAAGATCATCGATCT
CGAGAACCTCGGAGATTTTGCGCCATGA

Upstream 100 bases:

>100_bases
CGCGCGGGTAATGACCCACGACGCGCAGTTGTTCACCGCGTCGATCGCCGAGCACAACGGCAAGCTTTGTCTGACTTCCT
TTGTCTACGTGGAGTAATGG

Downstream 100 bases:

>100_bases
CGCGGCTGCGGTTCCGGGCCGCGCGGCTTGCGACGGCGCTGACCGCCGCGGCCGCCCTGAGCGCGATCACCGCCACGCCC
GCGCTGGCCGAGCCGCTCAA

Product: flagellar motor switch/type III secretory pathway protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MDSNEPNDLDALLDDLPADAPADTATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLL
VKVNGTTVGHAEVVVSGENYGLKIIDLENLGDFAP

Sequences:

>Translated_115_residues
MDSNEPNDLDALLDDLPADAPADTATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLL
VKVNGTTVGHAEVVVSGENYGLKIIDLENLGDFAP
>Mature_115_residues
MDSNEPNDLDALLDDLPADAPADTATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLL
VKVNGTTVGHAEVVVSGENYGLKIIDLENLGDFAP

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=70, Percent_Identity=42.8571428571429, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12138; Mature: 12138

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNEPNDLDALLDDLPADAPADTATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAEL
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEECCHHHHHHHH
MNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENYGLKIIDLENLGDFAP
HCCCCCCEEEEHHCCCCEEEEEECCCEECCEEEEEECCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MDSNEPNDLDALLDDLPADAPADTATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAEL
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEECCHHHHHHHH
MNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENYGLKIIDLENLGDFAP
HCCCCCCEEEEHHCCCCEEEEEECCCEECCEEEEEECCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]