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The map label for this gene is hrpB [H]

Identifier: 126444146

GI number: 126444146

Start: 2200353

End: 2201795

Strand: Reverse

Name: hrpB [H]

Synonym: BURPS668_A2270

Alternate gene names: 126444146

Gene position: 2201795-2200353 (Counterclockwise)

Preceding gene: 126444931

Following gene: 126443943

Centisome position: 70.4

GC content: 73.11

Gene sequence:

>1443_bases
ATGTTTTCGACACTCTATTTCGCCGCCGCCGCCGCGCTCGCCAACCCGTCTTCGAACGACGCCTACGCCGCGCGCGTGCT
CGACGGCCGCTTCGCCGAAGCGGTCGCGCTCGTCGCCGCGCGTTGCGACTCGCAGCCGGGCGACGCGGCCGCCGACGTGC
GCGACGTTCATGCGTACGCGGACATCCAGCTCGTGCTCGGGCGCTTCGAGGAAGCCGAGGACACGTTCCGCCGCGCGCAG
AAGCTGCTGCGCGAATCGCGCGACCAGACGCGCGTGATGACCTGCCGCAACGCGAGCTGGCAGGCGTTCTTCCAGAACCG
CTTCGGCGTGGCGCAGGCCGGGTTCCGGCGGATCGCCGACGATCGCGCGGCGAGTGCCGCGCAGAAGCTCGAGAGCCTCG
TCGGCACGTGTGTCGTCATGCACCATCTCGGCCGCGCCGAGGACGCGATGGCGACGCTCGACGTGCTCGACGCGGCCGCG
CGCGACGCCGATGGGCGCTGGGTGCGGCTCGCGGCCGCGCTGCGCGCGGATCTGCTGCTGCAATACCAGATCGGCCGCGC
CGACGCGCTCGGCGATCACGTGTACTGGCGCTCGGCGCTCGCCGAGCTGCCGCCGGCGGCGTTCGCGGAAACGGGCGCGC
CGCACGCCGCTTGCGCGGCCGATGCGCCGCCGCTGCTGCGCATGCGCGTCGCCTACATGCGCGAGACGCGCGCGCTCGCC
GCGGGCGACCACGCGGCGCTGGCGCGAATCGACACGCACGTGAGCTGGTGCGCGAAGGCGGGCCTGGCCGACTATCAGCG
CAGCGTGCGCCTGGAGGTCGCGCTCGCCGCGCTCGCGGGCCAGGCGCCGAACGTCGCCGACGCGATGATCGCGCCGTACC
GCGAGGCCGCGGGGCGTTGCGGCTCGCACGCGCGCTGGACGCTCGACTACCTGTACTGCGCGGCGAAGGTGCGCGAGCAA
CAGGGGCGGATTCGCGAATCGTCGTCGCTGTACGCGCACTATGCGCTCGCGTCGGTGCGGCACGTGCGCTCCGACGGCGC
GGCGCTCGCGCCGGCGCTCGCGATCGCGCGCTGCGGCACGCAGGCGGCCGCGCCGAGCGACGACGTGAGCGCGAGGCTGC
CCGGCAAGTACCGGCGCGCGTATCGCTATCTGATGGAGCGGCTCGACCAGCGCGAGCTGTCGGTGCGCGAGATCGCCGCG
CACATCGACGTGACCGAGCGCGCGCTGCAGGCGGCGTTCAAGGCCTATCTCGGGCTGTCGCCGAGCGAGCTGATCCGCCG
TCAGCGGATGGAGCGGATTCGCGGCGAGCTGCTGTCCGACGCGCCGCGCGCGGCGAGCGTGCTCGAGATCGCGAGCCGCT
GGGGAATCCAGCATCGGTCGACGCTCGTGAACGGCTATCGGCGCATGTTCGACGAGGCGCCTTCGCAGACGTTCGACCGA
TGA

Upstream 100 bases:

>100_bases
CATCCATGCGCTGCGCCCCGCGACGAGCGGCGGCGCCCGGCGCACGGGTCGAGCCTGAACCCATCATCGTATTCGAAACC
GCCTGCCGAGAGGAGCCGCC

Downstream 100 bases:

>100_bases
GCGGTGAAGCGCCGTCATTCGGTTTCGCGAAATCGTGCGGAACCGAAGGGGGGATGTGCGTGATGCGAGGGAATCGGGCG
ACATCGGCGCGCTCGGGCGG

Product: regulatory protein HrpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYADIQLVLGRFEEAEDTFRRAQ
KLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIADDRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAA
RDADGRWVRLAAALRADLLLQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRALA
AGDHAALARIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRCGSHARWTLDYLYCAAKVREQ
QGRIRESSSLYAHYALASVRHVRSDGAALAPALAIARCGTQAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAA
HIDVTERALQAAFKAYLGLSPSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR

Sequences:

>Translated_480_residues
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYADIQLVLGRFEEAEDTFRRAQ
KLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIADDRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAA
RDADGRWVRLAAALRADLLLQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRALA
AGDHAALARIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRCGSHARWTLDYLYCAAKVREQ
QGRIRESSSLYAHYALASVRHVRSDGAALAPALAIARCGTQAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAA
HIDVTERALQAAFKAYLGLSPSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR
>Mature_480_residues
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYADIQLVLGRFEEAEDTFRRAQ
KLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIADDRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAA
RDADGRWVRLAAALRADLLLQYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRALA
AGDHAALARIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRCGSHARWTLDYLYCAAKVREQ
QGRIRESSSLYAHYALASVRHVRSDGAALAPALAIARCGTQAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAA
HIDVTERALQAAFKAYLGLSPSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=102, Percent_Identity=31.3725490196078, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 52601; Mature: 52601

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYA
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DIQLVLGRFEEAEDTFRRAQKLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
DRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAARDADGRWVRLAAALRADLLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRALA
HHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHH
AGDHAALARIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRC
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
GSHARWTLDYLYCAAKVREQQGRIRESSSLYAHYALASVRHVRSDGAALAPALAIARCGT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
QAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHIDVTERALQAAFKAYLGLS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFSTLYFAAAAALANPSSNDAYAARVLDGRFAEAVALVAARCDSQPGDAAADVRDVHAYA
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DIQLVLGRFEEAEDTFRRAQKLLRESRDQTRVMTCRNASWQAFFQNRFGVAQAGFRRIAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
DRAASAAQKLESLVGTCVVMHHLGRAEDAMATLDVLDAAARDADGRWVRLAAALRADLLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QYQIGRADALGDHVYWRSALAELPPAAFAETGAPHAACAADAPPLLRMRVAYMRETRALA
HHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHH
AGDHAALARIDTHVSWCAKAGLADYQRSVRLEVALAALAGQAPNVADAMIAPYREAAGRC
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
GSHARWTLDYLYCAAKVREQQGRIRESSSLYAHYALASVRHVRSDGAALAPALAIARCGT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
QAAAPSDDVSARLPGKYRRAYRYLMERLDQRELSVREIAAHIDVTERALQAAFKAYLGLS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSELIRRQRMERIRGELLSDAPRAASVLEIASRWGIQHRSTLVNGYRRMFDEAPSQTFDR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]