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The map label for this gene is cph2 [H]

Identifier: 126443971

GI number: 126443971

Start: 1796506

End: 1798026

Strand: Reverse

Name: cph2 [H]

Synonym: BURPS668_A1840

Alternate gene names: 126443971

Gene position: 1798026-1796506 (Counterclockwise)

Preceding gene: 126443408

Following gene: 126443891

Centisome position: 57.49

GC content: 70.15

Gene sequence:

>1521_bases
ATGAAATCGATACATGCCGGCTTGCGCGGACGGCGAGGACCGTCGCACCGGATGCCGCTCGGCTATATGGTGATCGCCGG
CGCGGTGGCGGTCGCGATCGTCATGATGTCCATCTGCGCGGCGATCCTGCGCGACAGCCGCGACGACGCCTTCGAGCACG
CGCAGCGCGCCGCGCGCAACACGCTGCAGATGATCGAGCGCGACGTCACGCGCGGCTTTCGGCTGTACGACCGCACGCTC
GCGCGCATCGCCGCGCAGTTCGGCGATCGCCGGATCGCGGCGCTGCCCGCCGGTCTGCGCCGCGAGATCCTGTTCGATTC
CGCGGCGGCCGCCAACGAGGCCGGCGTGATGTACGTGCTCGACGCGAGCGGGCACGTGACGCTCGCGTCGACGCGCGGCC
CGCTGCCGGCCGAGCGCTTCGCGTCGTACGATTTCTTCGCCGCGCAGCGCGATACGCCGGCGCTCGGCATGTATCTGAGC
GGGCCGTACCGGATGTCGTCGCGCGACGGCGAGCCGTACGTCGCGTTGTCGCGCCGCATCGAGCGCGCGGACGGCGCGTT
TGCGGGCGTCGTCGTGCTCGCGGTGCGCATTGCGTATTTCCGGCAACTGCTGGCGGCGGCGAATGTGGGCCCGCACGGCG
CGCTCGTGCTGATGCACACGGACGGGCGCATCCTGATGCGGATTCCGTTCGACGAGAAATTCGTCGGCCTCGACCTGACC
GGGACGAGCCTCTACTCGCGCATGCAGTTCGGCCGTTCCGGCGAGTTCTTCGACGTCGAGCCGATCGATCACGTGAAGCG
CTTCTATCTGTATCGCCGGCTCGACGACGTTCCGCTCGTCGTGCAGGTGGCGATCGCCGACGACGACATCTATGCGACCT
GGCGTCTGCGCGCGTGGCGCTTCGGCGTGCTGACGGGCGTGTTCGCGCTGATCTTCGTCGTGATGAGCGCGTACCTCGCG
CATTCGCTGTGGCGCAAGTCGACGGCCGAGGCGGCGCTCGCGCGGCTCGCCGGCACCGACAGCCTCACGGGCCTCTACAA
CCGGCGCGCGCTCGACGAGACGCTCGAGCGCGAATGGCGGCGCGCGGTGGGCGGCGATCGTCCGCTCGCGATCCTGTTCG
TCGACATCGATCACTTCAAGCGCTACAACGACACGTACGGCCATCAGGTCGGCGACGAGGTGCTCGCGACGGTGTCGCGC
TGCATCGCGCAGCAGGCGGCGCGGCTCGGCGACGTCGTCGCGCGCTACGGCGGCGAGGAATTCGTCGTCGTGCTGCCGGA
TACGCCGCGCGGCGGCGCGCTCGTCGTCGCCGAGCGCGTGCGGCTCGGCGTGCGGATGCTCGGCATCGAGCACGAAGGCT
CGGAGGTCGGGTTCGTGACGGTCAGCGTCGGCGTCGCGGTGTGGCATCCGGACGGCGCGTCCGCGCCGCATATCGCCGCG
ATCGTCGAGGCGGCCGATCAGGCGCTCTATCAGGCGAAGGCGGACGGGCGCAATCGCGTCGTCGACCTCGGGCTCGGCTA
A

Upstream 100 bases:

>100_bases
GACGCGCGCGCCGTTTCGATGCGCGCTGTGCCGCGTGTGTCGCAGACCATGGCCGACGATGTTTTTCGTGGCGAAGCGCG
TCGCGCTCATCTAGATAAGC

Downstream 100 bases:

>100_bases
GGCGTGCGTGCGGCGTGGCGCGGCGCAACGGCTTCGGGGCGCTCGCACCCGAGGGGCGTTACGCGATGCGGCGACGCCAG
GCGGCCGACGCGGGGCGGCC

Product: putative transmembrane transcriptional sensor regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MKSIHAGLRGRRGPSHRMPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYDRTL
ARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLS
GPYRMSSRDGEPYVALSRRIERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLT
GTSLYSRMQFGRSGEFFDVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSAYLA
HSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSR
CIAQQAARLGDVVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAA
IVEAADQALYQAKADGRNRVVDLGLG

Sequences:

>Translated_506_residues
MKSIHAGLRGRRGPSHRMPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYDRTL
ARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLS
GPYRMSSRDGEPYVALSRRIERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLT
GTSLYSRMQFGRSGEFFDVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSAYLA
HSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSR
CIAQQAARLGDVVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAA
IVEAADQALYQAKADGRNRVVDLGLG
>Mature_506_residues
MKSIHAGLRGRRGPSHRMPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYDRTL
ARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLS
GPYRMSSRDGEPYVALSRRIERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLT
GTSLYSRMQFGRSGEFFDVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSAYLA
HSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSR
CIAQQAARLGDVVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAA
IVEAADQALYQAKADGRNRVVDLGLG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=39.8907103825137, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=40, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=37.5, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=38.6243386243386, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788085, Length=192, Percent_Identity=32.8125, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=201, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=37.4269005847953, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=325, Percent_Identity=27.3846153846154, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=35.3293413173653, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081974, Length=227, Percent_Identity=26.8722466960352, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=34.9397590361446, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=32.5443786982249, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=31.3253012048193, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=194, Percent_Identity=30.4123711340206, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55595; Mature: 55595

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIHAGLRGRRGPSHRMPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARN
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TLQMIERDVTRGFRLYDRTLARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCEEEEE
DASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALSRRI
ECCCCEEEECCCCCCCHHHHCCCCCEECCCCCCCEEEEECCCEEECCCCCCCHHHHHHHH
ERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLT
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCEEEEEEC
GTSLYSRMQFGRSGEFFDVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWR
HHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEHHHHH
FGVLTGVFALIFVVMSAYLAHSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEE
HHHCCCCCEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAA
EEEEECCCCCCCEEEEEHHHHHCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCCCHHHH
IVEAADQALYQAKADGRNRVVDLGLG
HHHHHHHHHHHHCCCCCCCEEEECCC
>Mature Secondary Structure
MKSIHAGLRGRRGPSHRMPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARN
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TLQMIERDVTRGFRLYDRTLARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCEEEEE
DASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALSRRI
ECCCCEEEECCCCCCCHHHHCCCCCEECCCCCCCEEEEECCCEEECCCCCCCHHHHHHHH
ERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLT
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCEEEEEEC
GTSLYSRMQFGRSGEFFDVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWR
HHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEHHHHH
FGVLTGVFALIFVVMSAYLAHSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEE
HHHCCCCCEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAA
EEEEECCCCCCCEEEEEHHHHHCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCCCHHHH
IVEAADQALYQAKADGRNRVVDLGLG
HHHHHHHHHHHHCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]