Click here to switch to the map view.

The map label for this gene is hrpB [H]

Identifier: 126443667

GI number: 126443667

Start: 1924372

End: 1925823

Strand: Reverse

Name: hrpB [H]

Synonym: BURPS668_A1987

Alternate gene names: 126443667

Gene position: 1925823-1924372 (Counterclockwise)

Preceding gene: 126445338

Following gene: 126445154

Centisome position: 61.58

GC content: 61.16

Gene sequence:

>1452_bases
ATGTTCTCAATGCTCTATTTTCCGATGGTATCGGCTCTGAGCTTGCTCGGTGCCGACGCGCCGACGCACTTGCGTTCGCA
CTTGAAGTTGATTCTGGGCGGCGAGTTCAATGCGGCGCTCGAAAGATCGAGCGAATGGGCCGAAACGACGGTGGCATCGG
AGCGGACATCATGGGATCTGCAATTGCACGCGGATCTGCAGCTGGTGCTTGGCTTCGAAGTCGAAGCCGAAGAAAACTAT
CGGCGCGCCCAGCGAAAAATTCGCGGCTCAAACAGTAAGATTCGCATCGCGACCTGCCGGAACGCCGCGTGGCAAGCCCT
GTTCCGCTACCGGGTCACGACCGCGCTCGCGTGTTTTTCCCGAATCTGCGACGAGCCCGGCATCGAGGCCGGCGGATTGG
TGGAGGCGCGCTTTGGGATCGCCTGCGCGCTCTATGAAATGGGGCGGATAGACGATGCGTTTGATGCGATCGATTCGATG
GAGAAGATCGCCGAACAGCAATCGGACGAGATGCGCGCGCACTGGAAAGACTTGATCGCCGTGTTGCGTTTCGATCTCGT
CGTGCAAAGCGAATTGCGCCGGGCTGCGGCGTTCGTCGATCATGTGTATTGGCAATCTGCGCAGTCGATGAGCCGGGTGG
ACCGCGCGCACGGTGTGTCGGAGGCCGCCGTATCCGTCGAGACGCCGCTGCTGCGCGGCCGGGTGGCCTATCTGCTGCAG
TTGCGATGCGCGGCCGCGGGCAATCGGGACGCCGTCGCCGAGTTGGCGCGTTGCCTCGATGCGGCGGGCGAGCAGGGATT
CGTCGACTTTCGATACACGCTGCGCCTCGAGATTGCGCTCGCCCTGCTCGCGGGCGACGCGCCCAATTTGGCGCAATTCG
TGTTGGAGCCGATTTCCGATACATTGCATGGCGCAGAGTCGAGCCGCCGCTATCGGGAATATTTCTATTGCGCCGCGAAG
GTGCATCTGGCGCAGGACCACACGCAGGAATCGCTGGCCTTATACCGACGCTACGCGCTGATCGCGATGAGATGTCTGCG
CGAGGACGCGCTGATCGGCAGGCAGTTCCTGGTCGGGCAGGAACTGAAGCAGCTTCCTCAGTCCGACGATGTGACCGTGC
GCTTGCCGTTGAAATATCGGCGCGCCTATCACTATATTCTCCAGAATCTCAACCGTAGCGACCTTTCGGTTCGGGAGATC
GCGGCGGAGATCGGCGTCACGGAGCGCGCGCTGCAGAACGCATTCAAGATCTACCTCGGGCTTTCCCCGCGTGAGCTGAT
CCGCTCGCGGAGAATGGAGCGTATCCGCACGGAACTCGTCGATTTCACGTTGACGGGTGAGCGCAACGTCAAGGAGGCGG
CCCGAAAATGGGGTGTCCAGAATGGTTCGACACTCGTGATCGCCTATCGGAAGGAGTACGACGAAACCCCTTCGGAAACG
CTCGCGCGCTGA

Upstream 100 bases:

>100_bases
CAGAGAAGTTGAGAATCCGCCTGTTTCGCAATAGCTATATTGATGACTCGAGATCAGGCTTGATGAAAGCGTCACATCAG
ACTAGGCGAGGAATCGTGTC

Downstream 100 bases:

>100_bases
TTCAAGATGATTCTCCTGCGCTCACTCAATTCCAAAGAACGATGAAAGCGAAAGCGCTGTTATGCGCGGCATGGTGCGTC
GCGATATTTGGCACCATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MFSMLYFPMVSALSLLGADAPTHLRSHLKLILGGEFNAALERSSEWAETTVASERTSWDLQLHADLQLVLGFEVEAEENY
RRAQRKIRGSNSKIRIATCRNAAWQALFRYRVTTALACFSRICDEPGIEAGGLVEARFGIACALYEMGRIDDAFDAIDSM
EKIAEQQSDEMRAHWKDLIAVLRFDLVVQSELRRAAAFVDHVYWQSAQSMSRVDRAHGVSEAAVSVETPLLRGRVAYLLQ
LRCAAAGNRDAVAELARCLDAAGEQGFVDFRYTLRLEIALALLAGDAPNLAQFVLEPISDTLHGAESSRRYREYFYCAAK
VHLAQDHTQESLALYRRYALIAMRCLREDALIGRQFLVGQELKQLPQSDDVTVRLPLKYRRAYHYILQNLNRSDLSVREI
AAEIGVTERALQNAFKIYLGLSPRELIRSRRMERIRTELVDFTLTGERNVKEAARKWGVQNGSTLVIAYRKEYDETPSET
LAR

Sequences:

>Translated_483_residues
MFSMLYFPMVSALSLLGADAPTHLRSHLKLILGGEFNAALERSSEWAETTVASERTSWDLQLHADLQLVLGFEVEAEENY
RRAQRKIRGSNSKIRIATCRNAAWQALFRYRVTTALACFSRICDEPGIEAGGLVEARFGIACALYEMGRIDDAFDAIDSM
EKIAEQQSDEMRAHWKDLIAVLRFDLVVQSELRRAAAFVDHVYWQSAQSMSRVDRAHGVSEAAVSVETPLLRGRVAYLLQ
LRCAAAGNRDAVAELARCLDAAGEQGFVDFRYTLRLEIALALLAGDAPNLAQFVLEPISDTLHGAESSRRYREYFYCAAK
VHLAQDHTQESLALYRRYALIAMRCLREDALIGRQFLVGQELKQLPQSDDVTVRLPLKYRRAYHYILQNLNRSDLSVREI
AAEIGVTERALQNAFKIYLGLSPRELIRSRRMERIRTELVDFTLTGERNVKEAARKWGVQNGSTLVIAYRKEYDETPSET
LAR
>Mature_483_residues
MFSMLYFPMVSALSLLGADAPTHLRSHLKLILGGEFNAALERSSEWAETTVASERTSWDLQLHADLQLVLGFEVEAEENY
RRAQRKIRGSNSKIRIATCRNAAWQALFRYRVTTALACFSRICDEPGIEAGGLVEARFGIACALYEMGRIDDAFDAIDSM
EKIAEQQSDEMRAHWKDLIAVLRFDLVVQSELRRAAAFVDHVYWQSAQSMSRVDRAHGVSEAAVSVETPLLRGRVAYLLQ
LRCAAAGNRDAVAELARCLDAAGEQGFVDFRYTLRLEIALALLAGDAPNLAQFVLEPISDTLHGAESSRRYREYFYCAAK
VHLAQDHTQESLALYRRYALIAMRCLREDALIGRQFLVGQELKQLPQSDDVTVRLPLKYRRAYHYILQNLNRSDLSVREI
AAEIGVTERALQNAFKIYLGLSPRELIRSRRMERIRTELVDFTLTGERNVKEAARKWGVQNGSTLVIAYRKEYDETPSET
LAR

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 54707; Mature: 54707

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSMLYFPMVSALSLLGADAPTHLRSHLKLILGGEFNAALERSSEWAETTVASERTSWDL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCEEE
QLHADLQLVLGFEVEAEENYRRAQRKIRGSNSKIRIATCRNAAWQALFRYRVTTALACFS
EEECCEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
RICDEPGIEAGGLVEARFGIACALYEMGRIDDAFDAIDSMEKIAEQQSDEMRAHWKDLIA
HHCCCCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRFDLVVQSELRRAAAFVDHVYWQSAQSMSRVDRAHGVSEAAVSVETPLLRGRVAYLLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
LRCAAAGNRDAVAELARCLDAAGEQGFVDFRYTLRLEIALALLAGDAPNLAQFVLEPISD
HHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
TLHGAESSRRYREYFYCAAKVHLAQDHTQESLALYRRYALIAMRCLREDALIGRQFLVGQ
HHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELKQLPQSDDVTVRLPLKYRRAYHYILQNLNRSDLSVREIAAEIGVTERALQNAFKIYLG
HHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCC
LSPRELIRSRRMERIRTELVDFTLTGERNVKEAARKWGVQNGSTLVIAYRKEYDETPSET
CCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCHHH
LAR
HCC
>Mature Secondary Structure
MFSMLYFPMVSALSLLGADAPTHLRSHLKLILGGEFNAALERSSEWAETTVASERTSWDL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCEEE
QLHADLQLVLGFEVEAEENYRRAQRKIRGSNSKIRIATCRNAAWQALFRYRVTTALACFS
EEECCEEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
RICDEPGIEAGGLVEARFGIACALYEMGRIDDAFDAIDSMEKIAEQQSDEMRAHWKDLIA
HHCCCCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRFDLVVQSELRRAAAFVDHVYWQSAQSMSRVDRAHGVSEAAVSVETPLLRGRVAYLLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
LRCAAAGNRDAVAELARCLDAAGEQGFVDFRYTLRLEIALALLAGDAPNLAQFVLEPISD
HHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
TLHGAESSRRYREYFYCAAKVHLAQDHTQESLALYRRYALIAMRCLREDALIGRQFLVGQ
HHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELKQLPQSDDVTVRLPLKYRRAYHYILQNLNRSDLSVREIAAEIGVTERALQNAFKIYLG
HHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCC
LSPRELIRSRRMERIRTELVDFTLTGERNVKEAARKWGVQNGSTLVIAYRKEYDETPSET
CCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCHHH
LAR
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]