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The map label for this gene is araC [H]

Identifier: 126443160

GI number: 126443160

Start: 1440838

End: 1441851

Strand: Reverse

Name: araC [H]

Synonym: BURPS668_A1497

Alternate gene names: 126443160

Gene position: 1441851-1440838 (Counterclockwise)

Preceding gene: 126445521

Following gene: 126442907

Centisome position: 46.1

GC content: 71.5

Gene sequence:

>1014_bases
ATGCCCGAGCGCAGCGATCGCCTCGATTTCTACATTCGCGACGAGGCCGCCCGCCGGGCGATCACCGAGCCGCACCGGCA
TGCGTACTTCCAGATCCAGTTCAACCTCGGCGGCGACACCGAGCAGCGCATCGGCGGGTTCACGCGAGCGTTCCCGCGCG
GCGCGCTCGCGTTCGTGCTGCCGTACCGCGAGCACCTGATCGCGCATCCGCCGGGCGCGCACTTCGTCGTGATCAATTTC
TCGCAAACGTTCCTGCGCGCCGATCTCGACGTCGATCCGCTCGATCTCGAGGATGTCTGCGCGCAGCGCGCGCCCGAGCT
TGCGCCGTTTCGCTTCCAGGAGCATCTGGACTTCATCCTGACCGGCGCGGCATTCGACGACGCGCGCCGCCTCGCGCAGC
GGATGCTAGAAGCCAACCGCGCGCGCACGTTCGGCTCGGTGCCGCTGCTGCGCGGCTATCTGCTGCAGTTGATCGGGCTC
GTCTGCACACAATACGCGGGGCCGCTCACGAAGCTCGCCCAGAGCGGCGCGCACCGCACGGGCCGCCGCGACGCGTTCGC
GCGCGTGCTGCGCCACGTCCGCGCGAACCTGACGAACGACGCGCTCACGCTCGCGGGCACCGCGCGCGCGGCGTGCCTGT
CGCCGAACTACCTCGCGCACCTGATCCGCAAGGAGACGGGCAGCACGTTCACCGATCTCGTCACCGCGCGGCGGATCGCG
CTTGCCCAATCGCTGCTCGCGCATACGACGCGGCGCATCGCCGACATCGCGCACGCGGTCGGGTTTCGCGACGAGGGCTA
TTTCTCGCGGCGCTTTCGCGCGTGCGTCGGCGTATCGCCGAAGGAGTATCGCGACGCGAACGGCGCGCCCGGCCCGGCCG
ATGCGCTCGATTCGGCCGATGCGCTCGATTCGGTCGATACGGCTGGGCCGCGCGCCGCGCCCGGGCGCGGCGAAACGCGC
GGCGCGGCCGGCGCGAAGAGCCCGGCGCGCGCGGCCGCGAAGCCGCGCGCGTAG

Upstream 100 bases:

>100_bases
GACCATTGCCCGTCGCGCCGCCGCGCGCGGCGGACCGCGCGACCCGCATCACGCTCACCGAACGCCCATGCCTTCCCCAG
TCAAGCCGCGCACGTACGCC

Downstream 100 bases:

>100_bases
TTTTGTCCATGAAGACCCCACATTCGTCGCATCGGCGCGCGGGCGGCGCGGGTATCGTCGACGTGTCGACGGCGCGCGCC
GCCGCGCCCGCCCCAGCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHPPGAHFVVINF
SQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGL
VCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIA
LAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAGPRAAPGRGETR
GAAGAKSPARAAAKPRA

Sequences:

>Translated_337_residues
MPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHPPGAHFVVINF
SQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGL
VCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIA
LAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAGPRAAPGRGETR
GAAGAKSPARAAAKPRA
>Mature_336_residues
PERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHPPGAHFVVINFS
QTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLV
CTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIAL
AQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAGPRAAPGRGETRG
AAGAKSPARAAAKPRA

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=94, Percent_Identity=37.2340425531915, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790391, Length=85, Percent_Identity=40, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36907; Mature: 36776

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVL
CCCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE
PYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFIL
CHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
TGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPLTKLAQSGAHRT
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
GRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIA
CHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSAD
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHCCHH
ALDSVDTAGPRAAPGRGETRGAAGAKSPARAAAKPRA
HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
PERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVL
CCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE
PYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFIL
CHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
TGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPLTKLAQSGAHRT
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
GRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIA
CHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSAD
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHCCHH
ALDSVDTAGPRAAPGRGETRGAAGAKSPARAAAKPRA
HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]