| Definition | Burkholderia pseudomallei 668 chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_009075 |
| Length | 3,127,456 |
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The map label for this gene is ydeP [H]
Identifier: 126443129
GI number: 126443129
Start: 1328107
End: 1330473
Strand: Reverse
Name: ydeP [H]
Synonym: BURPS668_A1418
Alternate gene names: 126443129
Gene position: 1330473-1328107 (Counterclockwise)
Preceding gene: 126445498
Following gene: 126442445
Centisome position: 42.54
GC content: 69.03
Gene sequence:
>2367_bases TTGCGTCGCCGTCCCCAACCGGCGCTCAGACATTTCAACGACATGAAAACCAAGGAACCCGACGCGCGCATCGAGCCGTA CGCCCATCCGGCGGGCGGCTGGGGCGCGCTCAAGTACGTCGCGATCAACCTGTTCAAGGAAAAGGTGCCGGGCGGCAATT ACCGCGCGCTGCTGCGCCAGAACCAGCCGGACGGCTTCGACTGCCCGGGCTGCGCGTGGCCCGATCGCGAGCATGCCTCG ACGTTCGAGTTCTGCGAGAACGGCGTGAAGGCCGTCGCGGCCGAGGCGACCGCCAAGCGCGTGACGCCCACGTTCTTCGC CGAGCATACGGTGAGCGCGCTCTTCGATCAGTCCGACTACGCGCTCGAGCAGCACGGCCGCCTGACCGACCCGATGGTCT ACGACGCCGCGACCGACCGCTACGTGCCGATCGCCTGGAACGCGGCGTTCGAGCTGATCGCGAACCACCTGCGCGCGCTC GGCGAGCCGAACCGCGCGGCGTTCTACACGTCGGGCCGCGCGAGCAACGAGGCCGCGTTCCTGTATCAGTTGCTCGTGCG CTACTACGGCACCAACAACTTCCCCGACTGCTCGAACATGTGCCACGAGGCGACGAGCCGCGGGCTGCCGGCCACGGTCG GCGTCGGCAAGGGCACGGTCACGCTCGATGATTTCGAGCAGGCCGACACGCTGCTGATCTTCGGCCAGAACCCAGCGACG AACCATCCGCGCATGATGGGCGAGCTGCGCGCGTGCGCGAAGCGCGGCGCGACGATCGTGTCGATCAATCCGCTGAAGGA GCGCGGGCTCGAGCGCTTCGCGAGCCCGCAGCATCCGGCCGAGATGCTGACGATGTCGAGCACGCCGATCGCGTCGACGT TCGTGCAGCCTCGCGTCGGCGGCGATCTCGCGCTCATCAAGGGCGTCGCCAAGCGCGTGCTCGAGCTCGACGACGCGGCG CGCGAACGCGGCGGCGCGCGCGTGCTCGACGTCGACTTCATCGCCGCGCACACGGCCGGCTTCGACACGTTCGCGGCCGA CCTGCGCGCGCAGGACTGGGCCGCGCTCGTCGGCGAAAGCGGCGTGCCGCGCGAGCAGATCGATGCGCTCGCGCGCATCT ACGTGCGCGGCGAACGCGTGATCGCGACGTGGGGAATGGGCCTCACGCAGCACAAGCACTCGGTCGCGACGGTGCACATG CTGTCGAACCTGATGCTGATGCGCGGCAACATCGGCCGCCCGGGCGCGGGCCTCTGCCCCGTGCGCGGGCATTCGAACGT GCAGGGCAACCGCACGGTCGGCATCGAGGAGAAGCCTTCCGACGCGTTCCTCGAGCGGCTCGGCCGCGTATTCGATTTCG CGCCGCCGCGCGGCCACGGCTACGACGTCGTCGAGACGATCGAGGCGATGCTCGACGGCCGCATCGGCGTGTTCATCGGC CTCGGCGGCAACTTCGCGATGGCGACGCCCGATACGCCGCGCACGTGGCAAGGGCTGCGCCGTTGCGGCCTGACCGTGCA CATCACGACGAAGCTCAACCGCAGCCATCTCGTGCATGGCCGTGAGGCGCTGATCCTGCCGACGCTCGGCCGCACCGAGA TCGATCTGCAGAACGGCGTCGCGCAGGGCGTGAGCGTCGAGGACTCGATGTGCATGGTCCATGCGTCGTACGGGATGAAC CCGCCGGCGTCGCCGAACCTGCTGTCGGAGGTCGCGATCGTCGCGCGGCTCGGGCACGCGCTCTTCGGCGGCGACAAGAT CGACTGGCTCGGCTATATGAACGACTACGCGAAGATCCGCGACGCGATCGAAGCGAGCATCGAGGGTTTCGACGACTACA ACGCGCGAATCGCGCGGCCGGGCGGCTTCCATCTGCGGGTCGCGTCGCGCGAGCGCGAATGGCTCACGCCGAGCGGCCGC GCGAACTTCATCGCCCATGCGCTGCCCGCCGACACGCCGATCCAGCGCGCCCGCGCGCGCCACGGCAAGCGGCTGATGAC GCTGATGACGACGCGCTCGCACGATCAGTACAACACGACGATCTACGCGCTCGACGACCGCTATCGCGGCGTGTTCGGCG AGCGGCGCGTCGTGTTCGCGCATCCCGACGATCTCGCGATGCTCGGCTTCGAGGCGGGCGAGCGCGTGGATCTCGAAACG GTATGGGACGACGGAATCGAGCGGCGCGTCGCGGGCTTTCTGCTCGTCGCGTACGACATTCCGCGCGGCTGCCTCGGCGC GTACTACCCGGAGACGAATCCGCTCGTGCCGCTCGACAGCGTGGGCGACGTCTGCAACACGCCGACGTCGAAGTCGATTC CGGTGCTGATGCACCGGTCGGCGGGCGACGCGGCGCACGCGGCATGA
Upstream 100 bases:
>100_bases GTACAGTTTATTGACGCATCGCACCATAACCAAGAACTGTGCTCTTTTTCTTTCCGGCAAGGTGTGCTCCCGCCCGGTCT CGCCGCGCGCGTACGCTTCG
Downstream 100 bases:
>100_bases CGCGAGGCCCGCATGATCGTCAGACCGCGCGAGCACGGGTTCCGGATGCTGTTCGTCTGGAACGGTTCGGTGCTCAAATC GATTCTGCCGCAGCTTGCGC
Product: molybdopterin oxidoreductase subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQNQPDGFDCPGCAWPDREHAS TFEFCENGVKAVAAEATAKRVTPTFFAEHTVSALFDQSDYALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRAL GEPNRAAFYTSGRASNEAAFLYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT NHPRMMGELRACAKRGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVGGDLALIKGVAKRVLELDDAA RERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGESGVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHM LSNLMLMRGNIGRPGAGLCPVRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGVAQGVSVEDSMCMVHASYGMN PPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIRDAIEASIEGFDDYNARIARPGGFHLRVASREREWLTPSGR ANFIAHALPADTPIQRARARHGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRSAGDAAHAA
Sequences:
>Translated_788_residues MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQNQPDGFDCPGCAWPDREHAS TFEFCENGVKAVAAEATAKRVTPTFFAEHTVSALFDQSDYALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRAL GEPNRAAFYTSGRASNEAAFLYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT NHPRMMGELRACAKRGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVGGDLALIKGVAKRVLELDDAA RERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGESGVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHM LSNLMLMRGNIGRPGAGLCPVRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGVAQGVSVEDSMCMVHASYGMN PPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIRDAIEASIEGFDDYNARIARPGGFHLRVASREREWLTPSGR ANFIAHALPADTPIQRARARHGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRSAGDAAHAA >Mature_788_residues MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQNQPDGFDCPGCAWPDREHAS TFEFCENGVKAVAAEATAKRVTPTFFAEHTVSALFDQSDYALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRAL GEPNRAAFYTSGRASNEAAFLYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT NHPRMMGELRACAKRGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVGGDLALIKGVAKRVLELDDAA RERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGESGVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHM LSNLMLMRGNIGRPGAGLCPVRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGVAQGVSVEDSMCMVHASYGMN PPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIRDAIEASIEGFDDYNARIARPGGFHLRVASREREWLTPSGR ANFIAHALPADTPIQRARARHGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRSAGDAAHAA
Specific function: Probably involved in acid resistance [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787778, Length=760, Percent_Identity=50, Blast_Score=753, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=313, Percent_Identity=27.4760383386581, Blast_Score=135, Evalue=1e-32, Organism=Escherichia coli, GI1788534, Length=400, Percent_Identity=24, Blast_Score=97, Evalue=5e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR010046 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: NA
Molecular weight: Translated: 86447; Mature: 86447
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQ CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHEEC NQPDGFDCPGCAWPDREHASTFEFCENGVKAVAAEATAKRVTPTFFAEHTVSALFDQSDY CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH ALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRALGEPNRAAFYTSGRASNEAAF HHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH LYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCC NHPRMMGELRACAKRGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVG CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHEEECCCCCHHHHCCCCCC GDLALIKGVAKRVLELDDAARERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGES CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCC GVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHMLSNLMLMRGNIGRPGAGLCP CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGV ECCCEEECCCCCCHHHHHHHHCCCEEEEEEECCCHHCCCCCCEEEEECCCCCEEEHHHCH AQGVSVEDSMCMVHASYGMNPPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIR HCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH DAIEASIEGFDDYNARIARPGGFHLRVASREREWLTPSGRANFIAHALPADTPIQRARAR HHHHHHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHH HGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET CCCEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEHH VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRS HHCCHHHHHHHHEEEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECC AGDAAHAA CCCCCCCC >Mature Secondary Structure MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQ CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHEEC NQPDGFDCPGCAWPDREHASTFEFCENGVKAVAAEATAKRVTPTFFAEHTVSALFDQSDY CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH ALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRALGEPNRAAFYTSGRASNEAAF HHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH LYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCC NHPRMMGELRACAKRGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVG CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHEEECCCCCHHHHCCCCCC GDLALIKGVAKRVLELDDAARERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGES CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCC GVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHMLSNLMLMRGNIGRPGAGLCP CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGV ECCCEEECCCCCCHHHHHHHHCCCEEEEEEECCCHHCCCCCCEEEEECCCCCEEEHHHCH AQGVSVEDSMCMVHASYGMNPPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIR HCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH DAIEASIEGFDDYNARIARPGGFHLRVASREREWLTPSGRANFIAHALPADTPIQRARAR HHHHHHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHH HGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET CCCEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEHH VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRS HHCCHHHHHHHHEEEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECC AGDAAHAA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]