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The map label for this gene is yiaD [C]

Identifier: 126443128

GI number: 126443128

Start: 294209

End: 295474

Strand: Reverse

Name: yiaD [C]

Synonym: BURPS668_A0328

Alternate gene names: 126443128

Gene position: 295474-294209 (Counterclockwise)

Preceding gene: 126444599

Following gene: 126443652

Centisome position: 9.45

GC content: 71.25

Gene sequence:

>1266_bases
GTGCATCATCCGGACATATCGGCTCCGGCCCCGACCTTCGATTCCGTCGCGGCGACGTTCGCGCGGCGCGAGCCGGCGCC
TGCGCCGGCCGGCGAGCCGCCCGCCGCGCGCCTCGCCGCGATCAGGCTCGCCCGCAACCCGCTGCTCGAAGCCGCGCGCG
TGCTGCTGCGGGCGCTCGCCGACATGCCCGAGCGGCTCGATCGCGACGACATTCCGCAATTGCGCCTGCTGCTGGAACAG
GAGGTGCGCCTGTTCCAGCGGCTCTGCGAACAGGCGAACATCCGGCGCGACCACATGCTCGGCGCGCGCTACTGCCTGTG
CACCGCGCTCGACGAGGCGGCGATGCAGACGTCGTGGGCACAATCGGCGAGCGGCAATCTCGGCACGTGGATCAGCGAGG
GGCTCGCGACGTCGTTCCACGAGGATCGCCAGGGCGGAGACAAGGTCTATCTGCTGATCGGCCGGCTGATGAATTCCCCG
CACGAGCACATCGACCTGCTCGAAGTCATCTATCGAATCTTGAGCCTCGGCTTCGAGGGCCGCTACCGTTACGAAGCCGA
CGGCCAGCGCAAGCACGAGACCGTGCGCCAGCGGCTCTACAACGAGATCGCATCGCAGCGCGGGCCGGTGTCGGTCGCGC
TGTCGCCGCACTGGCAGCCCGGCCCCCGCAGCAGGAGCGCGCCGTTTCGCGATTTCCCCGCGTGGGTCACGGCCGCCGTG
CTGTCGCTGATCGCGCTCGGGCTGTTCGGCTGCTTCAAGTACGCGCTGTCGACGCGCAGCGCCGACGTGCAGCAGCGGAT
CGCCGCGATCGCGCGGATGGCGCCGCCCGCCGCGCCGGCCGAGCTGCGCCTCGCGACGCTGCTCGCCGGCGAGATCGCGG
CGGGCACGCTCAGCGTCGAGGAAAACGCGCGCCGCAGCTCGGTGACGTTCCGCGGCGACGCGATGTTCGCGCCGGGCGCG
GCCGGCGTAAACCCGGCGATGGGGCCGCTCATCCGGAAAATCGCGGCCGAGATCGCGAAGGTGCCGGGCAAGGTGACGGT
GCGCGGCTACACCGACAATCAGCCGATCAAAAGCCGCCAGTTCGCGTCGAACGAGGCGCTATCCGAAGAGCGCGCGACGC
AGGTCATGCAGATGCTCCAGAGCGCGGGCGTGCCCGCGAGCCGCCTCGAGGCGCTCGGCAAGGGCGGCGCCGAGCCGATC
GGCGACAACCGGACCCCGCAGGGCCGCGCGCTGAACCGCCGCGTCGAAATCACGGTCGCGCGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGGATAGCGGCGAGTGCGCGCAGCGGCCGGGCCTCGCGCGCCGGCCATCGTGACGAATCCAACCCCTGTGGGGCA
TACCCGTGACCTCAGAAACC

Downstream 100 bases:

>100_bases
GCCGCGGCCCGCTACCCGGACCCTCGACATGAACAAGGTCCTGTCCTTTCTGGTGTCTCGATCGTTCATCGCGTTCGTCG
CGCTGCTCGCCGTCGCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Flagellar Motor Protein MotB; OmpA/MotB Domain-Containing Protein; Type IV / VI Secretion System Protein DotU Family; OmpA Family Protein; Flagellar Motor Protein MotD; OmpA/MotB; Type VI Secretion System OmpA/MotB Family Protein; DotU Family Type IV/VI Secretion System Protein; Flagellar Motor Protein; Outer Membrane Protein; Chemotaxis Protein MotB; Type VI Secretion System Core Protein; Chemotaxis MotB Protein; OmpA-Family Protein; Chemotaxis Protein PomB; SciP Protein; Flagellar Motor Rotation Protein MotB; Replication/Virulence Associated Protein; OmpA-Type Porin; Motility; Type IV/VI Secretion System Protein; Ompa/Motb Domain Protein; DotU Family Type IV / VI Secretion System Protein; Outer Membrane Porin Involved In Nitrogen Fixation; Surface Antigen Protein; OmpA-Like Porin; OmpA Family; OmpA/MotB Family Outer Membrane Protein; Type VI Secretion System Protein ImpK; T6ss U; Chemotaxis Protein; Endoflagellar Motor Protein; OmpA/MotB-Family Outer Membrane Protein; Type IV / VI Secretion System Family Protein DotU; Fis Family Transcriptional Regulator; Endoflagellar Motor Protein B; Outer Membrane Protein Ompa/Motb Family; Type VI Secretion System VasF

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MHHPDISAPAPTFDSVAATFARREPAPAPAGEPPAARLAAIRLARNPLLEAARVLLRALADMPERLDRDDIPQLRLLLEQ
EVRLFQRLCEQANIRRDHMLGARYCLCTALDEAAMQTSWAQSASGNLGTWISEGLATSFHEDRQGGDKVYLLIGRLMNSP
HEHIDLLEVIYRILSLGFEGRYRYEADGQRKHETVRQRLYNEIASQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAV
LSLIALGLFGCFKYALSTRSADVQQRIAAIARMAPPAAPAELRLATLLAGEIAAGTLSVEENARRSSVTFRGDAMFAPGA
AGVNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAEPI
GDNRTPQGRALNRRVEITVAR

Sequences:

>Translated_421_residues
MHHPDISAPAPTFDSVAATFARREPAPAPAGEPPAARLAAIRLARNPLLEAARVLLRALADMPERLDRDDIPQLRLLLEQ
EVRLFQRLCEQANIRRDHMLGARYCLCTALDEAAMQTSWAQSASGNLGTWISEGLATSFHEDRQGGDKVYLLIGRLMNSP
HEHIDLLEVIYRILSLGFEGRYRYEADGQRKHETVRQRLYNEIASQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAV
LSLIALGLFGCFKYALSTRSADVQQRIAAIARMAPPAAPAELRLATLLAGEIAAGTLSVEENARRSSVTFRGDAMFAPGA
AGVNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAEPI
GDNRTPQGRALNRRVEITVAR
>Mature_421_residues
MHHPDISAPAPTFDSVAATFARREPAPAPAGEPPAARLAAIRLARNPLLEAARVLLRALADMPERLDRDDIPQLRLLLEQ
EVRLFQRLCEQANIRRDHMLGARYCLCTALDEAAMQTSWAQSASGNLGTWISEGLATSFHEDRQGGDKVYLLIGRLMNSP
HEHIDLLEVIYRILSLGFEGRYRYEADGQRKHETVRQRLYNEIASQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAV
LSLIALGLFGCFKYALSTRSADVQQRIAAIARMAPPAAPAELRLATLLAGEIAAGTLSVEENARRSSVTFRGDAMFAPGA
AGVNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAEPI
GDNRTPQGRALNRRVEITVAR

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45926; Mature: 45926

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHPDISAPAPTFDSVAATFARREPAPAPAGEPPAARLAAIRLARNPLLEAARVLLRALA
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMPERLDRDDIPQLRLLLEQEVRLFQRLCEQANIRRDHMLGARYCLCTALDEAAMQTSWA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QSASGNLGTWISEGLATSFHEDRQGGDKVYLLIGRLMNSPHEHIDLLEVIYRILSLGFEG
HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
RYRYEADGQRKHETVRQRLYNEIASQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAV
CEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
LSLIALGLFGCFKYALSTRSADVQQRIAAIARMAPPAAPAELRLATLLAGEIAAGTLSVE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEHH
ENARRSSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQ
HCCCCCCEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH
FASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITVA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEC
R
C
>Mature Secondary Structure
MHHPDISAPAPTFDSVAATFARREPAPAPAGEPPAARLAAIRLARNPLLEAARVLLRALA
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMPERLDRDDIPQLRLLLEQEVRLFQRLCEQANIRRDHMLGARYCLCTALDEAAMQTSWA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QSASGNLGTWISEGLATSFHEDRQGGDKVYLLIGRLMNSPHEHIDLLEVIYRILSLGFEG
HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
RYRYEADGQRKHETVRQRLYNEIASQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAV
CEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
LSLIALGLFGCFKYALSTRSADVQQRIAAIARMAPPAAPAELRLATLLAGEIAAGTLSVE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEHH
ENARRSSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQ
HCCCCCCEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH
FASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITVA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA