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The map label for this gene is 126442861

Identifier: 126442861

GI number: 126442861

Start: 299677

End: 300258

Strand: Reverse

Name: 126442861

Synonym: BURPS668_A0334

Alternate gene names: NA

Gene position: 300258-299677 (Counterclockwise)

Preceding gene: 126442699

Following gene: 126445449

Centisome position: 9.6

GC content: 68.04

Gene sequence:

>582_bases
ATGTCCGCATCCAGCAGCTCTCAAAAATTCATCGCGCGCAACCGCGCGCCCCGCGTGCAGATCGAATACGACGTCGAAGT
CTACGGCTCGGAAAAGAAGGTCGAACTGCCGTTCGTGATGGGCGTGCTCGCCGACCTGTCGGGCAAGCCGGTCGCGCCGC
TGCCCGCCGTCGCCGACCGGCGCTTCCTCGACATCGACATCGACAACTTCGACGAGCGGATGAAGGCGATCAAGCCGCGC
GTGGCGTTCGCGGTGGACAACACGCTGTCGGGCGACGGGCAGCTGATGGTCGACATGACGTTCGAAAGCATCGAGGACTT
CTCGCCCGCCGCGATCGCGCGAATGGTCGGCCCGTTGCGGCAATTGCTCGAGGCGCGCACGCAGCTCGCGAACCTGCAGA
CCTACATGGACGGCAAGTCCGGCGCCGAGACGCTCGTCAACCAGTTGCTGCAGGACCCGGCGCTGCTGCGCTCGCTCGCG
GCCGCGCCGAAGCCGCAGCTCGCGGGCGGGCCGGACGCGGGCAATGCGCGCGGCGCGAAGGACGCGCCCGACACGGCGAA
CCACGACAGCGATGCGGCCTGA

Upstream 100 bases:

>100_bases
GGCCCGGCCAAGCAAGCCGGGCGGGGCCGCCGAACGCGCCGCTCACCGCCGTGCAGGCCGGCTAGCCCTGCTGTCTTTCC
CTTCACTCACGGAGTCCCGC

Downstream 100 bases:

>100_bases
GCGGCCGCCCTACACCATACCGGGGAAACGCACCATGAAGAAACAGCAAGTCCAGACGGCCGCCGCCGGCGTCCAGCCGC
AAGCAGATTCGGATTTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss S; Conserved Protein; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpB; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADRRFLDIDIDNFDERMKAIKPR
VAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLRQLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLA
AAPKPQLAGGPDAGNARGAKDAPDTANHDSDAA

Sequences:

>Translated_193_residues
MSASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADRRFLDIDIDNFDERMKAIKPR
VAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLRQLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLA
AAPKPQLAGGPDAGNARGAKDAPDTANHDSDAA
>Mature_192_residues
SASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADRRFLDIDIDNFDERMKAIKPRV
AFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLRQLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLAA
APKPQLAGGPDAGNARGAKDAPDTANHDSDAA

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20714; Mature: 20582

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADR
CCCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCC
RFLDIDIDNFDERMKAIKPRVAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLR
EEEEECCCCHHHHHHHHCCHHEEEECCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHH
QLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLAAAPKPQLAGGPDAGNARGAK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
DAPDTANHDSDAA
CCCCCCCCCCCCC
>Mature Secondary Structure 
SASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADR
CCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCC
RFLDIDIDNFDERMKAIKPRVAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLR
EEEEECCCCHHHHHHHHCCHHEEEECCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHH
QLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLAAAPKPQLAGGPDAGNARGAK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
DAPDTANHDSDAA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA