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The map label for this gene is ydeR [H]

Identifier: 126442843

GI number: 126442843

Start: 655059

End: 656261

Strand: Reverse

Name: ydeR [H]

Synonym: BURPS668_A0684

Alternate gene names: 126442843

Gene position: 656261-655059 (Counterclockwise)

Preceding gene: 126445187

Following gene: 126443815

Centisome position: 20.98

GC content: 70.32

Gene sequence:

>1203_bases
ATGAACGCCAACCTTGCCTCTTCCGCCACGGCCGGCCCCGTCCCGCAAATGGCGCGCGGCCTGATCCTGCTGTTCGCGTT
CAGTTGCGGCGCGATCGTCGCCAATCTCTACTACGCGCAGCCGATCATCGCGCTGATCGCGCCGGACCTGCACATGTCCG
GCGGCATGGCGAGCCTCATCGTGTCGCTCACGCAGATCGGCTACGCGGCCGGCCTGTTCTTTCTCGTGCCGCTCGGCGAT
CTGGTCGAGAACAAGAAGCTGATGGTCGTCACCGCGCTGACGTCGATCGCGAGCCTCGCGCTCGCCGCGACCGTGCGCGC
GCCGGGCCTGTTCCTCGCCGTCTCGCTGATCGTCGGCTTCAGCTCGGTCGCGGTGCAACTGCTGATTCCGCTCGCCGCGC
ACCTCGCGCCGAGCGAATCGCGCGGGCGCGTCGTCGGCACGATCATGAGCGGCCTGCTGCTCGGCATCCTGCTGTCGCGC
CCCGTCGCGAGCTTCATCGCCGATCACTTCGGCTGGCGCGCGGTGTTCGCGTTCGGCGCGGCCACGATGGCGGTCGTCAC
CGTGCTGCTGATGCTGACGGTCCCGAGCCGCCGGCCCGCGCATCAGGCGACGTACATGCAACTGATCCGCTCGCTCGGGC
GGCTCGTCGCGACGCAGCCGGCGCTGCGCGAGCGCTCGCTCTACCAGGGGCTGATGTTCGGTTCGTTCAGCCTGTTCTGG
AGCGCGGCGCCGGTCGAGCTGATGCATCGCCATCATCTGTCGCAATCGGCGATCGCGCTGTTCTCGCTCGTCGGCGCGAT
GGGCGCGAGCTCCGCGCCGATCGCCGGGCGCCTCGCCGACGCCGGCCACACCGGGCGCGCGACCGTCGTCGCGCTCGGGC
TCGCCGCGGCGAGCTTCGCGCCGGCGCTGTTCGTGCCGGGTGCCGGCGTCGCCGGGCTCGTCGCGACCAGCATCCTGCTC
GACTTCGCGGTGCAGATGAACATGGTGCTCGGCCAGCGGGAGATCTACGCGCTCGACGCGCACAGCCGCAATCGCCTGAA
CTCGATCTACATGACGAGCATCTTCGTCGGCGGCGCGATCGGCTCCGCGCTCGCGAGCGCGCTCTACGAGCACGGCGGCT
GGACATGGATCGCGATCGTCGGCGCGCTCTTTCCGCTCGCGGCGCTCGCGCGCTTCGCCTTTGCGTCGCGCGCCGCCCGA
TGA

Upstream 100 bases:

>100_bases
GCCGGGCGCGCGCGCAGCGGGCCGATGCCGCCGCCCGCCCGATACGTCGTCCGGCGCGCGGCGGCCGCGCCAACCCCATG
ACCTTCACTGCGAGTACACG

Downstream 100 bases:

>100_bases
GCCGCTTCGCGCGATGCATCGCATGCATGGCGGAGCCGGCCCGTTGCCCGTACAATCCGCCGGTCACGCTCGGTAAGCTC
CGACACGCGCCGCCGCCACG

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MNANLASSATAGPVPQMARGLILLFAFSCGAIVANLYYAQPIIALIAPDLHMSGGMASLIVSLTQIGYAAGLFFLVPLGD
LVENKKLMVVTALTSIASLALAATVRAPGLFLAVSLIVGFSSVAVQLLIPLAAHLAPSESRGRVVGTIMSGLLLGILLSR
PVASFIADHFGWRAVFAFGAATMAVVTVLLMLTVPSRRPAHQATYMQLIRSLGRLVATQPALRERSLYQGLMFGSFSLFW
SAAPVELMHRHHLSQSAIALFSLVGAMGASSAPIAGRLADAGHTGRATVVALGLAAASFAPALFVPGAGVAGLVATSILL
DFAVQMNMVLGQREIYALDAHSRNRLNSIYMTSIFVGGAIGSALASALYEHGGWTWIAIVGALFPLAALARFAFASRAAR

Sequences:

>Translated_400_residues
MNANLASSATAGPVPQMARGLILLFAFSCGAIVANLYYAQPIIALIAPDLHMSGGMASLIVSLTQIGYAAGLFFLVPLGD
LVENKKLMVVTALTSIASLALAATVRAPGLFLAVSLIVGFSSVAVQLLIPLAAHLAPSESRGRVVGTIMSGLLLGILLSR
PVASFIADHFGWRAVFAFGAATMAVVTVLLMLTVPSRRPAHQATYMQLIRSLGRLVATQPALRERSLYQGLMFGSFSLFW
SAAPVELMHRHHLSQSAIALFSLVGAMGASSAPIAGRLADAGHTGRATVVALGLAAASFAPALFVPGAGVAGLVATSILL
DFAVQMNMVLGQREIYALDAHSRNRLNSIYMTSIFVGGAIGSALASALYEHGGWTWIAIVGALFPLAALARFAFASRAAR
>Mature_400_residues
MNANLASSATAGPVPQMARGLILLFAFSCGAIVANLYYAQPIIALIAPDLHMSGGMASLIVSLTQIGYAAGLFFLVPLGD
LVENKKLMVVTALTSIASLALAATVRAPGLFLAVSLIVGFSSVAVQLLIPLAAHLAPSESRGRVVGTIMSGLLLGILLSR
PVASFIADHFGWRAVFAFGAATMAVVTVLLMLTVPSRRPAHQATYMQLIRSLGRLVATQPALRERSLYQGLMFGSFSLFW
SAAPVELMHRHHLSQSAIALFSLVGAMGASSAPIAGRLADAGHTGRATVVALGLAAASFAPALFVPGAGVAGLVATSILL
DFAVQMNMVLGQREIYALDAHSRNRLNSIYMTSIFVGGAIGSALASALYEHGGWTWIAIVGALFPLAALARFAFASRAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=390, Percent_Identity=26.9230769230769, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41581; Mature: 41581

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANLASSATAGPVPQMARGLILLFAFSCGAIVANLYYAQPIIALIAPDLHMSGGMASLI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
VSLTQIGYAAGLFFLVPLGDLVENKKLMVVTALTSIASLALAATVRAPGLFLAVSLIVGF
HHHHHHHHHHHHHHHHCCHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SSVAVQLLIPLAAHLAPSESRGRVVGTIMSGLLLGILLSRPVASFIADHFGWRAVFAFGA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATMAVVTVLLMLTVPSRRPAHQATYMQLIRSLGRLVATQPALRERSLYQGLMFGSFSLFW
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
SAAPVELMHRHHLSQSAIALFSLVGAMGASSAPIAGRLADAGHTGRATVVALGLAAASFA
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
PALFVPGAGVAGLVATSILLDFAVQMNMVLGQREIYALDAHSRNRLNSIYMTSIFVGGAI
CHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
GSALASALYEHGGWTWIAIVGALFPLAALARFAFASRAAR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNANLASSATAGPVPQMARGLILLFAFSCGAIVANLYYAQPIIALIAPDLHMSGGMASLI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
VSLTQIGYAAGLFFLVPLGDLVENKKLMVVTALTSIASLALAATVRAPGLFLAVSLIVGF
HHHHHHHHHHHHHHHHCCHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SSVAVQLLIPLAAHLAPSESRGRVVGTIMSGLLLGILLSRPVASFIADHFGWRAVFAFGA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATMAVVTVLLMLTVPSRRPAHQATYMQLIRSLGRLVATQPALRERSLYQGLMFGSFSLFW
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
SAAPVELMHRHHLSQSAIALFSLVGAMGASSAPIAGRLADAGHTGRATVVALGLAAASFA
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
PALFVPGAGVAGLVATSILLDFAVQMNMVLGQREIYALDAHSRNRLNSIYMTSIFVGGAI
CHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
GSALASALYEHGGWTWIAIVGALFPLAALARFAFASRAAR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]