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The map label for this gene is yhjC [C]

Identifier: 126442625

GI number: 126442625

Start: 648641

End: 649540

Strand: Reverse

Name: yhjC [C]

Synonym: BURPS668_A0677

Alternate gene names: 126442625

Gene position: 649540-648641 (Counterclockwise)

Preceding gene: 126443843

Following gene: 126443817

Centisome position: 20.77

GC content: 69.67

Gene sequence:

>900_bases
ATGCAATTCGACGATCTCCGAATCTTCGTCGCGACCGTGGAAGCGGGCAGCTTCACGGGCGCGGCCGACAAGCTCCTGCT
GTCCAAGCAGTTCGTCAGCCGGCGCGTGATGGCGCTCGAGGCGTCGCTCGGCGTCAGGCTACTCGTGCGCAACACGCGCA
AGCTCGCGGTGACGGAGCTCGGCCACGAGCTCCACGCGCGCGCGACGCGCATCCTCGCCGATATCGCGGAAACCGAGGAG
GCGATGTCCGCGCGCCGCGGCGACCTGCGCGGAACGCTGAAGATCAGCGCGCCGATGTCGTTCGGCATCGCGCATTTGTC
GCCGCTGATCGCCGAATTCCTCGTCCGGCATCCGGCCGTGCGGCTCCATGTCGAGCTCAGCGATCGTCATGTCGATCTGA
TCGGCGAAGGTTTCGACCTCGCGCTGCGCATCGGCGCGCTGCCCGATTCGACGCTGATCGCGCGGCGTCTCGGCGAGCTG
CGGATGGTCGCATGCTGCAGCCCCGCCTATCGCCGCAAGCACGGCGCGCCCGCGACGCCCGCCGATCTGCACGGCCGCGC
GTGCCTGCTGTACGGGCAGGAAGGCCGCACCGGCTGGGAGTTCATGATCGACGGCGCGCGCCGCACGTTCGAAGTGCAAG
GCGCGCTGCTCGCGAACAACGGCGACGTGGTCCGCGACGCGGCCGTCGCGGGGCTCGGCATCGCGCTGCTGCCGCATTTC
ATCGTCGCCCACGCGCTGGACACGGGCCGGCTCGTGGCCGTGCTCGAACCGTTCGCGCAGGCGCCGCTGCCGATCAACGC
CGTCTATCCGCAGCACCGGCAGGACATGGCGGCGTGCCGGACGTTTCTCGGCTTCATCGAAGAGCGGTTGCGCGAGCGCT
TCGCCAAGCCGCGCCGATAG

Upstream 100 bases:

>100_bases
GGGTTGCGCGCCTCGTCGATCGATGCAGGAAGCTTACGTCAACTATTTTGATACATATATAAACAGGGAGATAATTACTG
TCTCACTCAGGTGGACAATA

Downstream 100 bases:

>100_bases
CCGCGCGGCGAACGCGCCGCCATCGGCGCGCCGATACGCCGGCATACTCATACCGCGATCACATCCACGAGCCTCACGAC
AAGGCTATGCCGCAAACCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGHELHARATRILADIAETEE
AMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRLHVELSDRHVDLIGEGFDLALRIGALPDSTLIARRLGEL
RMVACCSPAYRRKHGAPATPADLHGRACLLYGQEGRTGWEFMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIALLPHF
IVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRERFAKPRR

Sequences:

>Translated_299_residues
MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGHELHARATRILADIAETEE
AMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRLHVELSDRHVDLIGEGFDLALRIGALPDSTLIARRLGEL
RMVACCSPAYRRKHGAPATPADLHGRACLLYGQEGRTGWEFMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIALLPHF
IVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRERFAKPRR
>Mature_299_residues
MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGHELHARATRILADIAETEE
AMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRLHVELSDRHVDLIGEGFDLALRIGALPDSTLIARRLGEL
RMVACCSPAYRRKHGAPATPADLHGRACLLYGQEGRTGWEFMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIALLPHF
IVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRERFAKPRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=34.8275862068965, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=31.0810810810811, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=31.9727891156463, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=33.2179930795848, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789639, Length=267, Percent_Identity=31.8352059925094, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=27.5862068965517, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=30.3886925795053, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789173, Length=264, Percent_Identity=27.6515151515151, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788706, Length=275, Percent_Identity=25.8181818181818, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=25.2559726962457, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=26.551724137931, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=32.03125, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=23.2954545454545, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32847; Mature: 32847

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTEL
CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
GHELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCE
RLHVELSDRHVDLIGEGFDLALRIGALPDSTLIARRLGELRMVACCSPAYRRKHGAPATP
EEEEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHEEECCCHHHHHCCCCCCCC
ADLHGRACLLYGQEGRTGWEFMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIALLPHF
CCCCCCEEEEECCCCCCCHHEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
IVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRERFAKPRR
HHHHHCCCCCCCEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTEL
CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
GHELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCE
RLHVELSDRHVDLIGEGFDLALRIGALPDSTLIARRLGELRMVACCSPAYRRKHGAPATP
EEEEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHEEECCCHHHHHCCCCCCCC
ADLHGRACLLYGQEGRTGWEFMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIALLPHF
CCCCCCEEEEECCCCCCCHHEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
IVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRERFAKPRR
HHHHHCCCCCCCEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]