Click here to switch to the map view.

The map label for this gene is vacJ [C]

Identifier: 126209378

GI number: 126209378

Start: 2151556

End: 2152305

Strand: Direct

Name: vacJ [C]

Synonym: APL_1918

Alternate gene names: 126209378

Gene position: 2151556-2152305 (Clockwise)

Preceding gene: 126209374

Following gene: 126209379

Centisome position: 94.6

GC content: 46.53

Gene sequence:

>750_bases
ATGAAATTAAAACAATTAAGTTTAGTAGCCGGCGTGCTGCTATTAACCGCTTGTTCGTCGTCAATCGATCCGGCTTCCGG
TGAGCGTAAAGATCCGCTGGAAGGCTTTAACCGAGCGATGTGGAAGGTCAATTACGATTATATTGATACCTATGCTCTCA
AACCGGTTGCAAAAGGTTGGCGTGATTATGTGCCGAGTCCGATTAAAACCGGTTTAACCAATGTGGCGAATAACCTTGAT
GAACCGGCAAGTTTTGTCAATCGTCTGTTAGAGGGCGAGGGTAAAAAGGCAATGATCCATTTTAACCGTTTCTGGATTAA
CTCGATTTTCGGTCTAGGCGGTTTAATTGACTGGGCAAGCCAAACGAAAGATTTAAAATTAGATAACGGTAATCGTGAAT
TCGGTCATACGCTGGGCAGTTATAGCGTGCCGACCGGCGCTTATATTATGGTGCCGGGTTACGGCGCGACCACACCTCGA
CAAGCGGTCGGAAAAGCGGCGGATTCCGCCTATCCCGTTCTATCAATGCTAACTATGCCGTGGACGGTGGCGAAATTTGC
GGTACAAGGTGTGGACAGTCGGGCGAAATTACTCGATCAAGACCCGTTATTACAGCAATCTGCTGATCCGTATGTGACTT
TCCGCGAGGCGTATTTCCAAAACCTCGAATTTAAAGTGAGCGACGGTAAAGCGGCGGAAGAAAGCGGTCAAGAACAGCTT
TCCGAAGAAGAATTAAAAGATATTGATTAA

Upstream 100 bases:

>100_bases
ACGTCTAGATTTCTATCTTCAATTTTACTTAGCTTTTCTTTGTGTTTTAGTACGACTTGGTTAAAATGTAACAATGATTT
CTTTAACAAGGCAAAATAGC

Downstream 100 bases:

>100_bases
TATCAGGCGGTCAAATTTGCAAAAAAGGTTGTAAATTTGACCGCTTGCTTTTGGATAGGGCAAAGGAGCAGAATATGAAA
ACCGAATTTATTCGTCAAAT

Product: lipoprotein VacJ-like protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKLKQLSLVAGVLLLTACSSSIDPASGERKDPLEGFNRAMWKVNYDYIDTYALKPVAKGWRDYVPSPIKTGLTNVANNLD
EPASFVNRLLEGEGKKAMIHFNRFWINSIFGLGGLIDWASQTKDLKLDNGNREFGHTLGSYSVPTGAYIMVPGYGATTPR
QAVGKAADSAYPVLSMLTMPWTVAKFAVQGVDSRAKLLDQDPLLQQSADPYVTFREAYFQNLEFKVSDGKAAEESGQEQL
SEEELKDID

Sequences:

>Translated_249_residues
MKLKQLSLVAGVLLLTACSSSIDPASGERKDPLEGFNRAMWKVNYDYIDTYALKPVAKGWRDYVPSPIKTGLTNVANNLD
EPASFVNRLLEGEGKKAMIHFNRFWINSIFGLGGLIDWASQTKDLKLDNGNREFGHTLGSYSVPTGAYIMVPGYGATTPR
QAVGKAADSAYPVLSMLTMPWTVAKFAVQGVDSRAKLLDQDPLLQQSADPYVTFREAYFQNLEFKVSDGKAAEESGQEQL
SEEELKDID
>Mature_249_residues
MKLKQLSLVAGVLLLTACSSSIDPASGERKDPLEGFNRAMWKVNYDYIDTYALKPVAKGWRDYVPSPIKTGLTNVANNLD
EPASFVNRLLEGEGKKAMIHFNRFWINSIFGLGGLIDWASQTKDLKLDNGNREFGHTLGSYSVPTGAYIMVPGYGATTPR
QAVGKAADSAYPVLSMLTMPWTVAKFAVQGVDSRAKLLDQDPLLQQSADPYVTFREAYFQNLEFKVSDGKAAEESGQEQL
SEEELKDID

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family [H]

Homologues:

Organism=Escherichia coli, GI1788688, Length=250, Percent_Identity=46, Blast_Score=229, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007428 [H]

Pfam domain/function: PF04333 VacJ [H]

EC number: NA

Molecular weight: Translated: 27468; Mature: 27468

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKQLSLVAGVLLLTACSSSIDPASGERKDPLEGFNRAMWKVNYDYIDTYALKPVAKGW
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHH
RDYVPSPIKTGLTNVANNLDEPASFVNRLLEGEGKKAMIHFNRFWINSIFGLGGLIDWAS
HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
QTKDLKLDNGNREFGHTLGSYSVPTGAYIMVPGYGATTPRQAVGKAADSAYPVLSMLTMP
CCCCEEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHCC
WTVAKFAVQGVDSRAKLLDQDPLLQQSADPYVTFREAYFQNLEFKVSDGKAAEESGQEQL
HHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHH
SEEELKDID
HHHHHHCCC
>Mature Secondary Structure
MKLKQLSLVAGVLLLTACSSSIDPASGERKDPLEGFNRAMWKVNYDYIDTYALKPVAKGW
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHH
RDYVPSPIKTGLTNVANNLDEPASFVNRLLEGEGKKAMIHFNRFWINSIFGLGGLIDWAS
HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
QTKDLKLDNGNREFGHTLGSYSVPTGAYIMVPGYGATTPRQAVGKAADSAYPVLSMLTMP
CCCCEEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHCC
WTVAKFAVQGVDSRAKLLDQDPLLQQSADPYVTFREAYFQNLEFKVSDGKAAEESGQEQL
HHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHH
SEEELKDID
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]