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The map label for this gene is xylR [H]

Identifier: 126209372

GI number: 126209372

Start: 2145778

End: 2146959

Strand: Direct

Name: xylR [H]

Synonym: APL_1912

Alternate gene names: 126209372

Gene position: 2145778-2146959 (Clockwise)

Preceding gene: 126209371

Following gene: 126209373

Centisome position: 94.34

GC content: 40.61

Gene sequence:

>1182_bases
ATGGAAAAAAAATCTTTTCGTATCGCTTTATGTTTTAATGCGAATAAAGTTTACGACCGCCAAGTGATTGAGGGAATCGG
GCAATATATCCAAGCCTCTCAATGTATTTGGAATATTTTTATGCAGGACGATTTTACCTACCGTAAACAAGATCTGGAAG
GTCTGTTAATTGACGGCATTATTGCCGATTTTGACGATCCCGAAACCGCGGCATTGCTAAGTGATATGAATATTCCGGTG
ATTGCAGTCGGCGGTTCCTATCAAAATCTGGATTATTATCCGCACATTCCGTATGTTGCCACCGATAATTACGCTTTGGT
GGAAACGGCGTTGTTACATCTCAAACAAAAAGGCATTAATCGGTTTGCGTTTTACGGTATCCCGAGCGATGAACAGAAAC
ATTGGTCGGTGGAACGTAAAAATGCGTTCATCGATTTGATGGAAAAGTACGAACATCAAACCAATATCTATTTAGGGCAT
CAAGTCAATGCGCAAAATTGGTTGGAAGCGCAATCCGCATTAAGCGAATGGTTAGCCTCGTTACCGGCGCAAACCGGTAT
TATTGCGGTAACCGACGCCAGAGCCAGACATTTACTACAAGCCTGTGAATATCTGAATATTGCCGTGCCGGAACAAATTT
CCGTGATTGGTATTGATAACGAAGAGCTGATTCAACATTTATCGCGCGTTTCGCTTTCGTCGGTGATGCAAGGTACAAAG
CAAATCGGTTACCAAGCGGCAAAAATGTTGCATCATTTATTCGAAGGCAAAAAATTGAGTCATTCTCCCGTCTTGATTCC
GCCGTTACGGGTAGAGCAACGCCGTTCTACCGATTTCCAAGCGTTCCAAGATCCGTTTGTGATTCAAGCGATGCACTATA
TTCATCATAATGCCTGTAAAGGAATTAAAACCGAACAAGTTCTCGATCATTTAAGGATTTCGCGTTCCAATTTAGAACAA
CGTTTTAAGCACGAATTGAATAAGACGATTCATCAGGTAATTCATGAGGAAAAACTGAATCGTGCAAAATATATGCTACA
ATTTACCGATATTTCGATCCAAGAAATTTCGGAAATTTGCGGTTACCCTTCTTTACCCTATTTCTATTCGGTATTTAAAA
AAGAATATGCGGATACCCCGAAAGCATTTAGACAATCCCATCACAAAATTTTAGTTGAGTAA

Upstream 100 bases:

>100_bases
TAGCAAGCACTCAATATTCTTAGGAAATATTGAGTGCTTTTTTCATAACTACGCAAAATGTGGTATGTTAGCGCGACTGT
CTAACTACGTAATGATATTT

Downstream 100 bases:

>100_bases
GGTTATGGCAAAAAAATTTTTATTGAGTCTGGCAACCCTTTCGCTCGGGTTAGCCGGCTGTAGTACTACCGGTTATCAAT
CTACTTTAACGGAAGGTGTC

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MEKKSFRIALCFNANKVYDRQVIEGIGQYIQASQCIWNIFMQDDFTYRKQDLEGLLIDGIIADFDDPETAALLSDMNIPV
IAVGGSYQNLDYYPHIPYVATDNYALVETALLHLKQKGINRFAFYGIPSDEQKHWSVERKNAFIDLMEKYEHQTNIYLGH
QVNAQNWLEAQSALSEWLASLPAQTGIIAVTDARARHLLQACEYLNIAVPEQISVIGIDNEELIQHLSRVSLSSVMQGTK
QIGYQAAKMLHHLFEGKKLSHSPVLIPPLRVEQRRSTDFQAFQDPFVIQAMHYIHHNACKGIKTEQVLDHLRISRSNLEQ
RFKHELNKTIHQVIHEEKLNRAKYMLQFTDISIQEISEICGYPSLPYFYSVFKKEYADTPKAFRQSHHKILVE

Sequences:

>Translated_393_residues
MEKKSFRIALCFNANKVYDRQVIEGIGQYIQASQCIWNIFMQDDFTYRKQDLEGLLIDGIIADFDDPETAALLSDMNIPV
IAVGGSYQNLDYYPHIPYVATDNYALVETALLHLKQKGINRFAFYGIPSDEQKHWSVERKNAFIDLMEKYEHQTNIYLGH
QVNAQNWLEAQSALSEWLASLPAQTGIIAVTDARARHLLQACEYLNIAVPEQISVIGIDNEELIQHLSRVSLSSVMQGTK
QIGYQAAKMLHHLFEGKKLSHSPVLIPPLRVEQRRSTDFQAFQDPFVIQAMHYIHHNACKGIKTEQVLDHLRISRSNLEQ
RFKHELNKTIHQVIHEEKLNRAKYMLQFTDISIQEISEICGYPSLPYFYSVFKKEYADTPKAFRQSHHKILVE
>Mature_393_residues
MEKKSFRIALCFNANKVYDRQVIEGIGQYIQASQCIWNIFMQDDFTYRKQDLEGLLIDGIIADFDDPETAALLSDMNIPV
IAVGGSYQNLDYYPHIPYVATDNYALVETALLHLKQKGINRFAFYGIPSDEQKHWSVERKNAFIDLMEKYEHQTNIYLGH
QVNAQNWLEAQSALSEWLASLPAQTGIIAVTDARARHLLQACEYLNIAVPEQISVIGIDNEELIQHLSRVSLSSVMQGTK
QIGYQAAKMLHHLFEGKKLSHSPVLIPPLRVEQRRSTDFQAFQDPFVIQAMHYIHHNACKGIKTEQVLDHLRISRSNLEQ
RFKHELNKTIHQVIHEEKLNRAKYMLQFTDISIQEISEICGYPSLPYFYSVFKKEYADTPKAFRQSHHKILVE

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=392, Percent_Identity=55.8673469387755, Blast_Score=477, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 45365; Mature: 45365

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKSFRIALCFNANKVYDRQVIEGIGQYIQASQCIWNIFMQDDFTYRKQDLEGLLIDGI
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEHHH
IADFDDPETAALLSDMNIPVIAVGGSYQNLDYYPHIPYVATDNYALVETALLHLKQKGIN
HHCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCC
RFAFYGIPSDEQKHWSVERKNAFIDLMEKYEHQTNIYLGHQVNAQNWLEAQSALSEWLAS
EEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
LPAQTGIIAVTDARARHLLQACEYLNIAVPEQISVIGIDNEELIQHLSRVSLSSVMQGTK
CCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QIGYQAAKMLHHLFEGKKLSHSPVLIPPLRVEQRRSTDFQAFQDPFVIQAMHYIHHNACK
HHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCCCCHHHHCCHHHHHHHHHHHHHHHC
GIKTEQVLDHLRISRSNLEQRFKHELNKTIHQVIHEEKLNRAKYMLQFTDISIQEISEIC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHH
GYPSLPYFYSVFKKEYADTPKAFRQSHHKILVE
CCCCCHHHHHHHHHHHCCCHHHHHHCCCCEECC
>Mature Secondary Structure
MEKKSFRIALCFNANKVYDRQVIEGIGQYIQASQCIWNIFMQDDFTYRKQDLEGLLIDGI
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEHHH
IADFDDPETAALLSDMNIPVIAVGGSYQNLDYYPHIPYVATDNYALVETALLHLKQKGIN
HHCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCC
RFAFYGIPSDEQKHWSVERKNAFIDLMEKYEHQTNIYLGHQVNAQNWLEAQSALSEWLAS
EEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
LPAQTGIIAVTDARARHLLQACEYLNIAVPEQISVIGIDNEELIQHLSRVSLSSVMQGTK
CCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QIGYQAAKMLHHLFEGKKLSHSPVLIPPLRVEQRRSTDFQAFQDPFVIQAMHYIHHNACK
HHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCCCCHHHHCCHHHHHHHHHHHHHHHC
GIKTEQVLDHLRISRSNLEQRFKHELNKTIHQVIHEEKLNRAKYMLQFTDISIQEISEIC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHH
GYPSLPYFYSVFKKEYADTPKAFRQSHHKILVE
CCCCCHHHHHHHHHHHCCCHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]