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The map label for this gene is ycjD [C]

Identifier: 126209265

GI number: 126209265

Start: 2024484

End: 2024867

Strand: Direct

Name: ycjD [C]

Synonym: APL_1801

Alternate gene names: 126209265

Gene position: 2024484-2024867 (Clockwise)

Preceding gene: 126209264

Following gene: 126209266

Centisome position: 89.01

GC content: 40.89

Gene sequence:

>384_bases
GTGGAGGAAATAGTGCAACCCTACTCAAAATCACTAAAACCACTTTCACAAAAATTGCGTTCCGATCAAACTGACGCAGA
GCGGAAATTGTGGCGACGGATAAACCGAGATCAGCTCTTGAGTTTTCGTTTTTATCGCCAAAAGCCGTTGCTAAATTACA
TTGTGGATTTTTACTGCCCGAAAGCGAAGTTGATTATTGAGCTGGACGGCAGTCAGCATTATGAGCCTGATTATCAGGAA
AAAGACTGCTTGCGTGATGCAGAGTTAAATTCACTCGGTTTTACCGTAATGCGGTTTAGTAATGACGAAGTGTATTTTGA
AATTGAATCGGTGGTAGAGCAGATTTATTTGTTTTTGGAGAATGTGAAGACAAATCTCCCCTAA

Upstream 100 bases:

>100_bases
GCAGAAGCGTATTATGTAAGCCGTGAGGCGTTGGGTTTCCCAGGGTGTAAGTAGTTTAAATCTCCCCCTGCCCCCTCTTT
ACAAAAGAGGGGGAATAAAT

Downstream 100 bases:

>100_bases
CCCCTCTTTACTAAAGAGGGGGATCAGATCTCCAAGAATTTAGAGACTTGTGTTCTTAATCGATGATTGGAAATTTGAAA
TATAAGCGGTGGGGATTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MEEIVQPYSKSLKPLSQKLRSDQTDAERKLWRRINRDQLLSFRFYRQKPLLNYIVDFYCPKAKLIIELDGSQHYEPDYQE
KDCLRDAELNSLGFTVMRFSNDEVYFEIESVVEQIYLFLENVKTNLP

Sequences:

>Translated_127_residues
MEEIVQPYSKSLKPLSQKLRSDQTDAERKLWRRINRDQLLSFRFYRQKPLLNYIVDFYCPKAKLIIELDGSQHYEPDYQE
KDCLRDAELNSLGFTVMRFSNDEVYFEIESVVEQIYLFLENVKTNLP
>Mature_127_residues
MEEIVQPYSKSLKPLSQKLRSDQTDAERKLWRRINRDQLLSFRFYRQKPLLNYIVDFYCPKAKLIIELDGSQHYEPDYQE
KDCLRDAELNSLGFTVMRFSNDEVYFEIESVVEQIYLFLENVKTNLP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_1162 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=105, Percent_Identity=40.9523809523809, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 15294; Mature: 15294

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIVQPYSKSLKPLSQKLRSDQTDAERKLWRRINRDQLLSFRFYRQKPLLNYIVDFYCP
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCC
KAKLIIELDGSQHYEPDYQEKDCLRDAELNSLGFTVMRFSNDEVYFEIESVVEQIYLFLE
CEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHH
NVKTNLP
HHHHCCC
>Mature Secondary Structure
MEEIVQPYSKSLKPLSQKLRSDQTDAERKLWRRINRDQLLSFRFYRQKPLLNYIVDFYCP
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCC
KAKLIIELDGSQHYEPDYQEKDCLRDAELNSLGFTVMRFSNDEVYFEIESVVEQIYLFLE
CEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHH
NVKTNLP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]