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The map label for this gene is ycfD [C]

Identifier: 126209254

GI number: 126209254

Start: 2012932

End: 2014125

Strand: Reverse

Name: ycfD [C]

Synonym: APL_1790

Alternate gene names: 126209254

Gene position: 2014125-2012932 (Counterclockwise)

Preceding gene: 126209261

Following gene: 126209222

Centisome position: 88.55

GC content: 43.38

Gene sequence:

>1194_bases
ATGAACATTCCATTCTGCTTACCTGAAAATATTAGCCCGGAAACTTTCTTACGTGATTATTGGCAAAAACGACCGCTGTT
AATCCGTAACGGCTTGCCGCAAATTGTCGGATTATTCGAGCCGGAAGATATTATGGAGTTAGCGCTGGAAGAGGAAATCA
CTGCTCGCTTAATCAAATGTGAAAATGAGCAATGGTCGGTTAAAACCAGTCCGTTTGCGGAAAGCGATTTACAAGATCTG
CCGGCCCAATTCTCTGTTATGGTACAAAATTTGGAACAATGGTCGCCGGAACTCGGTGCATTGTGGCAAGCGTTTAGCTT
CTTACCTCAATGGCAACGTGACGACATTATGGTTTCTTGTTCGCCTAAAGGCGGTACGGTTGGTAAACATTATGATGAAT
ACGATGTTTTTCTCGTACAAGGTTACGGCCAACGCCGTTGGCAGCTAGGTAAGTGGTGTGATCCTTCCACCGAATTTAAA
CCGAATCAGCCGATTCGTATTTTTGACGATATGGGCGAATTGGTGTTAGACGAAGTGATGAATCCGGGTGACGTGCTTTA
CGTGCCTTCTCGTATGGCGCACTATGGCGTATCGGAAACGGACGGTCTAACCTTCTCTTTCGGTTTACGTTACCCGAATG
CGGCGGATCTACTCGAAAATTTCTGCAAAACCTTAGAACACCATTCGGAAGTGATTGCCGGTTCGGAATTCAATATCCCA
TTCCGCCTTGCGCCGCATGAACAGCCAAATGCGTTACTTGATCCAAAAATGGTGAAAGTGCTGAAACATCAATTAATCGA
CTTATTACAAAACTCTGATCAATTTGATGAAATCTTTACTCACAGCGTTGCTACTGCGGTAAGTTCTCGTCGCTATGAAT
TATTGCAAACGGATAATGAATACTACCCGGATGAAGTACAAGGTATTTTAGAAGAAGGCGGTTGGATCCAACAAGATGCC
AATGTCAAAATGCTTTATACCGAAAATCCTCAACGTATTTATGTAAACGGTGAATGGATTGACGAGCTAAATGAAGCGGA
ACAAAACCTATTAATTCGTATCGCTAACGGTGATGCGGTTTCTTGGAATAAACTGGCGTCTAAAGCCAAAGATCAAGAAG
AGCTGGAATTATTACTCGATACGCTATGCGATTGGCTGGACAACGGTTGGGTTATTTTAGAAGAAGCGGAATAA

Upstream 100 bases:

>100_bases
TTAAATATTTAATGGCTAAATAAGCTGATATAACACAAGATATTCAAGCGTTTATCAGGTAGAATAGTTTTAATCAAAGA
GAAAAACATAAGGAGCATCT

Downstream 100 bases:

>100_bases
TTCGTTATTTCACCATAAAGGCGGGGATATTCTTGCCTTTTATTTTTTACAAGCGGTCTGATTTAGCGCAAAGTTTGCAA
AAAATTAACCGAAAACAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MNIPFCLPENISPETFLRDYWQKRPLLIRNGLPQIVGLFEPEDIMELALEEEITARLIKCENEQWSVKTSPFAESDLQDL
PAQFSVMVQNLEQWSPELGALWQAFSFLPQWQRDDIMVSCSPKGGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
PNQPIRIFDDMGELVLDEVMNPGDVLYVPSRMAHYGVSETDGLTFSFGLRYPNAADLLENFCKTLEHHSEVIAGSEFNIP
FRLAPHEQPNALLDPKMVKVLKHQLIDLLQNSDQFDEIFTHSVATAVSSRRYELLQTDNEYYPDEVQGILEEGGWIQQDA
NVKMLYTENPQRIYVNGEWIDELNEAEQNLLIRIANGDAVSWNKLASKAKDQEELELLLDTLCDWLDNGWVILEEAE

Sequences:

>Translated_397_residues
MNIPFCLPENISPETFLRDYWQKRPLLIRNGLPQIVGLFEPEDIMELALEEEITARLIKCENEQWSVKTSPFAESDLQDL
PAQFSVMVQNLEQWSPELGALWQAFSFLPQWQRDDIMVSCSPKGGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
PNQPIRIFDDMGELVLDEVMNPGDVLYVPSRMAHYGVSETDGLTFSFGLRYPNAADLLENFCKTLEHHSEVIAGSEFNIP
FRLAPHEQPNALLDPKMVKVLKHQLIDLLQNSDQFDEIFTHSVATAVSSRRYELLQTDNEYYPDEVQGILEEGGWIQQDA
NVKMLYTENPQRIYVNGEWIDELNEAEQNLLIRIANGDAVSWNKLASKAKDQEELELLLDTLCDWLDNGWVILEEAE
>Mature_397_residues
MNIPFCLPENISPETFLRDYWQKRPLLIRNGLPQIVGLFEPEDIMELALEEEITARLIKCENEQWSVKTSPFAESDLQDL
PAQFSVMVQNLEQWSPELGALWQAFSFLPQWQRDDIMVSCSPKGGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
PNQPIRIFDDMGELVLDEVMNPGDVLYVPSRMAHYGVSETDGLTFSFGLRYPNAADLLENFCKTLEHHSEVIAGSEFNIP
FRLAPHEQPNALLDPKMVKVLKHQLIDLLQNSDQFDEIFTHSVATAVSSRRYELLQTDNEYYPDEVQGILEEGGWIQQDA
NVKMLYTENPQRIYVNGEWIDELNEAEQNLLIRIANGDAVSWNKLASKAKDQEELELLLDTLCDWLDNGWVILEEAE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=353, Percent_Identity=30.028328611898, Blast_Score=169, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45767; Mature: 45767

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPFCLPENISPETFLRDYWQKRPLLIRNGLPQIVGLFEPEDIMELALEEEITARLIKC
CCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHC
ENEQWSVKTSPFAESDLQDLPAQFSVMVQNLEQWSPELGALWQAFSFLPQWQRDDIMVSC
CCCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE
SPKGGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFKPNQPIRIFDDMGELVLDEVM
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
NPGDVLYVPSRMAHYGVSETDGLTFSFGLRYPNAADLLENFCKTLEHHSEVIAGSEFNIP
CCCCEEEECCHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FRLAPHEQPNALLDPKMVKVLKHQLIDLLQNSDQFDEIFTHSVATAVSSRRYELLQTDNE
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
YYPDEVQGILEEGGWIQQDANVKMLYTENPQRIYVNGEWIDELNEAEQNLLIRIANGDAV
CCCHHHHHHHHCCCEEEECCCEEEEEECCCCEEEECCHHHHHHHHHCCCEEEEEECCCCC
SWNKLASKAKDQEELELLLDTLCDWLDNGWVILEEAE
CHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC
>Mature Secondary Structure
MNIPFCLPENISPETFLRDYWQKRPLLIRNGLPQIVGLFEPEDIMELALEEEITARLIKC
CCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHC
ENEQWSVKTSPFAESDLQDLPAQFSVMVQNLEQWSPELGALWQAFSFLPQWQRDDIMVSC
CCCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE
SPKGGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFKPNQPIRIFDDMGELVLDEVM
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
NPGDVLYVPSRMAHYGVSETDGLTFSFGLRYPNAADLLENFCKTLEHHSEVIAGSEFNIP
CCCCEEEECCHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FRLAPHEQPNALLDPKMVKVLKHQLIDLLQNSDQFDEIFTHSVATAVSSRRYELLQTDNE
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
YYPDEVQGILEEGGWIQQDANVKMLYTENPQRIYVNGEWIDELNEAEQNLLIRIANGDAV
CCCHHHHHHHHCCCEEEECCCEEEEEECCCCEEEECCHHHHHHHHHCCCEEEEEECCCCC
SWNKLASKAKDQEELELLLDTLCDWLDNGWVILEEAE
CHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]