| Definition | Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome. |
|---|---|
| Accession | NC_009053 |
| Length | 2,274,482 |
Click here to switch to the map view.
The map label for this gene is 126209145
Identifier: 126209145
GI number: 126209145
Start: 1907178
End: 1908869
Strand: Reverse
Name: 126209145
Synonym: APL_1681
Alternate gene names: NA
Gene position: 1908869-1907178 (Counterclockwise)
Preceding gene: 126209146
Following gene: 126209144
Centisome position: 83.93
GC content: 27.96
Gene sequence:
>1692_bases ATGAGTTTTATTCATATTCAACAAATATCAACAAAAATTAAAGAATTTTTTGAAGATAAAATAGATATAAAGGATATATC ATCTAAAAAAGATGAAGATAGAGAAGATAATTTATTATCTAGATGTTTGGCAGCTTATGCTATTTACTATTTATCAGAAT GTGGGCTAGATGAAGCTTCTAATTCAGTTACTGATGGTGAAAAAGATAATGGTATTGATGCCATATATTATTCAGAATAT TCTAAAAAATTATTTATTGTTCAATCTAAATGGAGAAAAGATGGAACTGGTGAGCCAAATAAAGGGGATTTATTAAAAAT AAATCAGGGTATAAAAGATCTATTTCAACTAAATTTGGATAGCTTTAATGAAAAAATTCAGAAGAAAGCTGATACTATTA CTAAGGCTCTTACTACTTATGGTTCTAAAATTGAAATAATACTAATTGATACTTGTACTACTCCTGAATTAGTTGAAGAT AACATCAGACCTATTATTCAAACTTTAAACGAAATAAATGAGAATGGAGATTCTAATGCCGAGCCAGTAGCTGTATTTAA AAGGATGAATCAAAGTGATATTCACCGTTCATTAATCATGAAGGCTGGTAGGGACTCGATAAATTTAGAGCTGGGGTTAT CTAATTGGGGAGATATTTCGGAACCATATAAAGCATTTTATGGATGTATCCCTGCAAGTGAAATAGCATCTTGGTGGGAG GAATATGGGGATAAATTATTTGAAAATAATATCCGTAAAGTATTAGGAAGAACAGATGTCAATGAAGAAATGGAGAAACC CTTACAGGATTCTCCAGAATTATTTTGGTATTTTAATAATGGAATTACAATTATTGCAGATAAAATTTCTAAAACAGCAG TAGGAGGTGGTTCAAGAAGTATAGGGTCATTTAAATTAGAAAATGTATCTATTGTTAATGGAGCTCAAACTGTTAGTACT ATAGGGAAATTTAAATCTAAACATGATGAAGATTCATTAAGTAATGTTCAAATTAATATCAGACTAATTGAAGTTACAAA AAATTCTGAGCTAGAAAAATCAATTACAAAGGCGAATAATAGGCAAAACAGAATTGAGGGTATGGATTTTGCTTCACAAG ATCTTGAGCAACAAAGAATAAAAAATGAATTGGTTTTAGAGAATGTTGAATATAGTATTATGCGTTCAGAATCATTTAAA TCTAGCGAAAAATCATTTAATTTACAAGAAGCCACTATTGCCCTAGCCTCAGTAAATAGAAACATTACTCTTGCGGTTCA AGTTAAAAATGCTATAGGTAAATTTTTTGAAGATTTAGATAAAGGAATATATAAAGAAATTTTTAATGCTGGTGTTAATG GGTATCAAGTTTATAATTCAGTATTATTTACTAGGAAAGTTGATTCTATATTGATAGATAAAATAGATGAGTTACCTAAA AAAGGAGGAAAGTTATATGGAATATATGTACATGGAAATAGAGTTGTAACACATTTAGTTGCAAAAAAAATAAATATATA TACTGAATTACGAACTAAAAATCTAAACTTGAATATAGAAGATGAGGTTAATTTTATTATAGAAAAAATATCTAAGTTTA TTGAGGAAAAATATCCTGATGCATTCTTAGCTTCTTTCTTTAAAAATATGACTAAATGTAAAGAGTTAGAAAACTACATT TTTACTTCATAG
Upstream 100 bases:
>100_bases TTGTTTAGGAATGCGAGGGTTACGTTAGGGTAGATTTGATTATAAATATTTAACCACACAATATACCTTATGTGATATTG TTTTTCTTGAGGAAAAAATA
Downstream 100 bases:
>100_bases ATTTAATACCTCCTGATAGTACTCGTCGAGTGCTATCGTAATATTGAAACAAGCGGTTAAATTTTCTTAAACATTTACAA AATATTAGAGGAATTTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MSFIHIQQISTKIKEFFEDKIDIKDISSKKDEDREDNLLSRCLAAYAIYYLSECGLDEASNSVTDGEKDNGIDAIYYSEY SKKLFIVQSKWRKDGTGEPNKGDLLKINQGIKDLFQLNLDSFNEKIQKKADTITKALTTYGSKIEIILIDTCTTPELVED NIRPIIQTLNEINENGDSNAEPVAVFKRMNQSDIHRSLIMKAGRDSINLELGLSNWGDISEPYKAFYGCIPASEIASWWE EYGDKLFENNIRKVLGRTDVNEEMEKPLQDSPELFWYFNNGITIIADKISKTAVGGGSRSIGSFKLENVSIVNGAQTVST IGKFKSKHDEDSLSNVQINIRLIEVTKNSELEKSITKANNRQNRIEGMDFASQDLEQQRIKNELVLENVEYSIMRSESFK SSEKSFNLQEATIALASVNRNITLAVQVKNAIGKFFEDLDKGIYKEIFNAGVNGYQVYNSVLFTRKVDSILIDKIDELPK KGGKLYGIYVHGNRVVTHLVAKKINIYTELRTKNLNLNIEDEVNFIIEKISKFIEEKYPDAFLASFFKNMTKCKELENYI FTS
Sequences:
>Translated_563_residues MSFIHIQQISTKIKEFFEDKIDIKDISSKKDEDREDNLLSRCLAAYAIYYLSECGLDEASNSVTDGEKDNGIDAIYYSEY SKKLFIVQSKWRKDGTGEPNKGDLLKINQGIKDLFQLNLDSFNEKIQKKADTITKALTTYGSKIEIILIDTCTTPELVED NIRPIIQTLNEINENGDSNAEPVAVFKRMNQSDIHRSLIMKAGRDSINLELGLSNWGDISEPYKAFYGCIPASEIASWWE EYGDKLFENNIRKVLGRTDVNEEMEKPLQDSPELFWYFNNGITIIADKISKTAVGGGSRSIGSFKLENVSIVNGAQTVST IGKFKSKHDEDSLSNVQINIRLIEVTKNSELEKSITKANNRQNRIEGMDFASQDLEQQRIKNELVLENVEYSIMRSESFK SSEKSFNLQEATIALASVNRNITLAVQVKNAIGKFFEDLDKGIYKEIFNAGVNGYQVYNSVLFTRKVDSILIDKIDELPK KGGKLYGIYVHGNRVVTHLVAKKINIYTELRTKNLNLNIEDEVNFIIEKISKFIEEKYPDAFLASFFKNMTKCKELENYI FTS >Mature_562_residues SFIHIQQISTKIKEFFEDKIDIKDISSKKDEDREDNLLSRCLAAYAIYYLSECGLDEASNSVTDGEKDNGIDAIYYSEYS KKLFIVQSKWRKDGTGEPNKGDLLKINQGIKDLFQLNLDSFNEKIQKKADTITKALTTYGSKIEIILIDTCTTPELVEDN IRPIIQTLNEINENGDSNAEPVAVFKRMNQSDIHRSLIMKAGRDSINLELGLSNWGDISEPYKAFYGCIPASEIASWWEE YGDKLFENNIRKVLGRTDVNEEMEKPLQDSPELFWYFNNGITIIADKISKTAVGGGSRSIGSFKLENVSIVNGAQTVSTI GKFKSKHDEDSLSNVQINIRLIEVTKNSELEKSITKANNRQNRIEGMDFASQDLEQQRIKNELVLENVEYSIMRSESFKS SEKSFNLQEATIALASVNRNITLAVQVKNAIGKFFEDLDKGIYKEIFNAGVNGYQVYNSVLFTRKVDSILIDKIDELPKK GGKLYGIYVHGNRVVTHLVAKKINIYTELRTKNLNLNIEDEVNFIIEKISKFIEEKYPDAFLASFFKNMTKCKELENYIF TS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64068; Mature: 63937
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFIHIQQISTKIKEFFEDKIDIKDISSKKDEDREDNLLSRCLAAYAIYYLSECGLDEAS CCEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC NSVTDGEKDNGIDAIYYSEYSKKLFIVQSKWRKDGTGEPNKGDLLKINQGIKDLFQLNLD CCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCHH SFNEKIQKKADTITKALTTYGSKIEIILIDTCTTPELVEDNIRPIIQTLNEINENGDSNA HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC EPVAVFKRMNQSDIHRSLIMKAGRDSINLELGLSNWGDISEPYKAFYGCIPASEIASWWE CHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHH EYGDKLFENNIRKVLGRTDVNEEMEKPLQDSPELFWYFNNGITIIADKISKTAVGGGSRS HHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEECCCEEEEEECHHHHHCCCCCCC IGSFKLENVSIVNGAQTVSTIGKFKSKHDEDSLSNVQINIRLIEVTKNSELEKSITKANN CCCEEECCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHCC RQNRIEGMDFASQDLEQQRIKNELVLENVEYSIMRSESFKSSEKSFNLQEATIALASVNR CHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHCCCHHHHHEEEEECCC NITLAVQVKNAIGKFFEDLDKGIYKEIFNAGVNGYQVYNSVLFTRKVDSILIDKIDELPK CEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KGGKLYGIYVHGNRVVTHLVAKKINIYTELRTKNLNLNIEDEVNFIIEKISKFIEEKYPD CCCCEEEEEEECCHHHHHHHHHHHHHHEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCH AFLASFFKNMTKCKELENYIFTS HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SFIHIQQISTKIKEFFEDKIDIKDISSKKDEDREDNLLSRCLAAYAIYYLSECGLDEAS CEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC NSVTDGEKDNGIDAIYYSEYSKKLFIVQSKWRKDGTGEPNKGDLLKINQGIKDLFQLNLD CCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCHH SFNEKIQKKADTITKALTTYGSKIEIILIDTCTTPELVEDNIRPIIQTLNEINENGDSNA HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC EPVAVFKRMNQSDIHRSLIMKAGRDSINLELGLSNWGDISEPYKAFYGCIPASEIASWWE CHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHH EYGDKLFENNIRKVLGRTDVNEEMEKPLQDSPELFWYFNNGITIIADKISKTAVGGGSRS HHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEECCCEEEEEECHHHHHCCCCCCC IGSFKLENVSIVNGAQTVSTIGKFKSKHDEDSLSNVQINIRLIEVTKNSELEKSITKANN CCCEEECCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHCC RQNRIEGMDFASQDLEQQRIKNELVLENVEYSIMRSESFKSSEKSFNLQEATIALASVNR CHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHCCCHHHHHEEEEECCC NITLAVQVKNAIGKFFEDLDKGIYKEIFNAGVNGYQVYNSVLFTRKVDSILIDKIDELPK CEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KGGKLYGIYVHGNRVVTHLVAKKINIYTELRTKNLNLNIEDEVNFIIEKISKFIEEKYPD CCCCEEEEEEECCHHHHHHHHHHHHHHEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCH AFLASFFKNMTKCKELENYIFTS HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA