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The map label for this gene is rbsC [H]

Identifier: 126209135

GI number: 126209135

Start: 1897019

End: 1897978

Strand: Direct

Name: rbsC [H]

Synonym: APL_1671

Alternate gene names: 126209135

Gene position: 1897019-1897978 (Clockwise)

Preceding gene: 126209134

Following gene: 126209136

Centisome position: 83.4

GC content: 43.23

Gene sequence:

>960_bases
ATGAACAAAGCATTTAATCTAAAAAAATTCCTGATAGAACAACGTTCTATTATTGCATTACTCGCATTAATTGCAGTGGT
GTCATTTTTAAATCCGAATTTTTTTAGTGTCGATAACTTACTGAATATCCTACGCCAAACGTCAGTGAATGCGATTATTG
CGATCGGTATGACGTTTGTGATTTTAATTGCCGGGATTGACCTTTCGGTCGGTTCGGTCTTAGCACTAACCGGAGCGGTA
GCGGCAACTTTAATCGGTTTAGATCTCTCGATTTATTTAGTGGTGCCGGCGGTATTGTTATTCGGTGCGGCAATCGGCTT
GTTAAACGGTGCGTTAGTCGCCTTCGGTAAAGTACAGGCGTTTATGGCAACGTTAATCACGATGTTGTTATTGCGTGGCG
TGACGATGATTTATATGGAAGGTCGCCCGATTTCTACCGGTTTTTCCGACAATGCCGATTACTTTGCCGAGATTGGTACC
GGCGAATTATTCGGTGTGCCGGTGCCGGTTTGGTTAATGTTTATCTTATTTGCTATCGGTTGGTTTATTCTGACTCAAAC
TCGTATCGGTCGTTATATTTATGCGCTTGGCGGTAACGAATCGGCAACCGCACTTTCTGGTATCAACGTGAATAAAATTA
AACTGTTTGTGTTTGCGGTCAGTGGTGTGTTAGCAGCACTTGCAGGTTTAATTGTCACCTCTCGTTTAGGTTCGGCACAA
CCGACCGCCGGTAGCGGTTATGAACTCGATGCGATTGCTGCGGTTGTGGTCGGTGGAACCAGTTTAATGGGCGGTAAAGG
TCGTATTATCGGCACACTAATTGGTGCGTTAATTATCGGCTTCCTCAGCAATGCGTTAAATTTATTAGATATTGACTCTT
ACTATCAGCTTGTCGCAAAAGCGTTAGTAATTTTAGCAGCGGTTATTTTGGATAACTTCCTTGGCCGTAAAAAAGCGTAA

Upstream 100 bases:

>100_bases
ACGGAAGCCACCCAAGAAAAATTACTAGCGGCAGCAATCGGCAAATAGTTGAGATTTTCAAGCGGTCAAATTTAGCAAGA
ATTTTGCAAAAGGAATCAAT

Downstream 100 bases:

>100_bases
CCTACTCTCAAAAGGAGATTTCTATGAAAAAATTAACTTCTTTAGCCCTTGCTCTAGGTTTGGTATTCGGTACAAAAGCA
ATGGCGCAAGACACATTGGC

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNKAFNLKKFLIEQRSIIALLALIAVVSFLNPNFFSVDNLLNILRQTSVNAIIAIGMTFVILIAGIDLSVGSVLALTGAV
AATLIGLDLSIYLVVPAVLLFGAAIGLLNGALVAFGKVQAFMATLITMLLLRGVTMIYMEGRPISTGFSDNADYFAEIGT
GELFGVPVPVWLMFILFAIGWFILTQTRIGRYIYALGGNESATALSGINVNKIKLFVFAVSGVLAALAGLIVTSRLGSAQ
PTAGSGYELDAIAAVVVGGTSLMGGKGRIIGTLIGALIIGFLSNALNLLDIDSYYQLVAKALVILAAVILDNFLGRKKA

Sequences:

>Translated_319_residues
MNKAFNLKKFLIEQRSIIALLALIAVVSFLNPNFFSVDNLLNILRQTSVNAIIAIGMTFVILIAGIDLSVGSVLALTGAV
AATLIGLDLSIYLVVPAVLLFGAAIGLLNGALVAFGKVQAFMATLITMLLLRGVTMIYMEGRPISTGFSDNADYFAEIGT
GELFGVPVPVWLMFILFAIGWFILTQTRIGRYIYALGGNESATALSGINVNKIKLFVFAVSGVLAALAGLIVTSRLGSAQ
PTAGSGYELDAIAAVVVGGTSLMGGKGRIIGTLIGALIIGFLSNALNLLDIDSYYQLVAKALVILAAVILDNFLGRKKA
>Mature_319_residues
MNKAFNLKKFLIEQRSIIALLALIAVVSFLNPNFFSVDNLLNILRQTSVNAIIAIGMTFVILIAGIDLSVGSVLALTGAV
AATLIGLDLSIYLVVPAVLLFGAAIGLLNGALVAFGKVQAFMATLITMLLLRGVTMIYMEGRPISTGFSDNADYFAEIGT
GELFGVPVPVWLMFILFAIGWFILTQTRIGRYIYALGGNESATALSGINVNKIKLFVFAVSGVLAALAGLIVTSRLGSAQ
PTAGSGYELDAIAAVVVGGTSLMGGKGRIIGTLIGALIIGFLSNALNLLDIDSYYQLVAKALVILAAVILDNFLGRKKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=64.5161290322581, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=42.3197492163009, Blast_Score=210, Evalue=8e-56,
Organism=Escherichia coli, GI1788896, Length=321, Percent_Identity=37.0716510903427, Blast_Score=184, Evalue=7e-48,
Organism=Escherichia coli, GI145693152, Length=287, Percent_Identity=39.3728222996516, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI87082395, Length=260, Percent_Identity=41.1538461538462, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788471, Length=338, Percent_Identity=37.8698224852071, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789992, Length=139, Percent_Identity=48.2014388489209, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI145693214, Length=257, Percent_Identity=38.9105058365759, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=33.5664335664336, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787794, Length=281, Percent_Identity=30.2491103202847, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33466; Mature: 33466

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAFNLKKFLIEQRSIIALLALIAVVSFLNPNFFSVDNLLNILRQTSVNAIIAIGMTFV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ILIAGIDLSVGSVLALTGAVAATLIGLDLSIYLVVPAVLLFGAAIGLLNGALVAFGKVQA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMATLITMLLLRGVTMIYMEGRPISTGFSDNADYFAEIGTGELFGVPVPVWLMFILFAIG
HHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHCCCCCCEECCCHHHHHHHHHHHHH
WFILTQTRIGRYIYALGGNESATALSGINVNKIKLFVFAVSGVLAALAGLIVTSRLGSAQ
HHHHHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTAGSGYELDAIAAVVVGGTSLMGGKGRIIGTLIGALIIGFLSNALNLLDIDSYYQLVAK
CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVILAAVILDNFLGRKKA
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKAFNLKKFLIEQRSIIALLALIAVVSFLNPNFFSVDNLLNILRQTSVNAIIAIGMTFV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ILIAGIDLSVGSVLALTGAVAATLIGLDLSIYLVVPAVLLFGAAIGLLNGALVAFGKVQA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMATLITMLLLRGVTMIYMEGRPISTGFSDNADYFAEIGTGELFGVPVPVWLMFILFAIG
HHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHCCCCCCEECCCHHHHHHHHHHHHH
WFILTQTRIGRYIYALGGNESATALSGINVNKIKLFVFAVSGVLAALAGLIVTSRLGSAQ
HHHHHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTAGSGYELDAIAAVVVGGTSLMGGKGRIIGTLIGALIIGFLSNALNLLDIDSYYQLVAK
CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVILAAVILDNFLGRKKA
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]