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The map label for this gene is atpF

Identifier: 126209114

GI number: 126209114

Start: 1878182

End: 1878652

Strand: Reverse

Name: atpF

Synonym: APL_1650

Alternate gene names: 126209114

Gene position: 1878652-1878182 (Counterclockwise)

Preceding gene: 126209115

Following gene: 126209113

Centisome position: 82.6

GC content: 40.98

Gene sequence:

>471_bases
GTGAATTTAAATGCAACACTAATCGGTCAGCTTATTGCATTCGCACTTTTCGTTGCGTTTTGTATGAAATTTGTATGGCC
GCCGCTGATTAAAGCGATCGAAGAACGTCAAGCAAATATTGCTAACGCTTTGGCATCGGCTGAAAAAGCGAAACAAGAAC
AAGCGGATTCTAAAGCTGCTGCGGATCAAGAAATCCTTAAAGCGAAAGAAGAAGCACAAAAAATTATTGATTTAGCAACG
AAACGTCGTAATGAAATTTTAGAGACTGTTCAAGCGGAAGCTGAAATTGAACGCCAACGAATTATTGAACAAGGTCATGC
GGAAGTGGAAAGCGAGCGTAAACGTGTTCAAGAAGAACTTCGTCAGAAAGTGGCTGCATTGGCAGTTGCGGGTGCGGAGA
AAATTGTTGGTTGTTCTGTTGATCAAGCAGCGAACAATGACATTATTGATAAGCTAGTTGCAGAACTATAA

Upstream 100 bases:

>100_bases
TTTTCATCTTCGCGAACCCGTTCATTGATTTATTGAAATAAGTCGGGTCTCTCTTTTCCGTTATTCATTGAATAACTTAA
CCGACTTTTAGGAGGGCGTT

Downstream 100 bases:

>100_bases
CAAGGTGGGGCAGATGTCAGAATTAAGTACAGTAGCTCGCCCCTACGCTAAAGCAGCTTTTGATTTTGCTTTAGAACAAG
GTCAGTTGGACAAATGGCAA

Product: F0F1 ATP synthase subunit B

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MNLNATLIGQLIAFALFVAFCMKFVWPPLIKAIEERQANIANALASAEKAKQEQADSKAAADQEILKAKEEAQKIIDLAT
KRRNEILETVQAEAEIERQRIIEQGHAEVESERKRVQEELRQKVAALAVAGAEKIVGCSVDQAANNDIIDKLVAEL

Sequences:

>Translated_156_residues
MNLNATLIGQLIAFALFVAFCMKFVWPPLIKAIEERQANIANALASAEKAKQEQADSKAAADQEILKAKEEAQKIIDLAT
KRRNEILETVQAEAEIERQRIIEQGHAEVESERKRVQEELRQKVAALAVAGAEKIVGCSVDQAANNDIIDKLVAEL
>Mature_156_residues
MNLNATLIGQLIAFALFVAFCMKFVWPPLIKAIEERQANIANALASAEKAKQEQADSKAAADQEILKAKEEAQKIIDLAT
KRRNEILETVQAEAEIERQRIIEQGHAEVESERKRVQEELRQKVAALAVAGAEKIVGCSVDQAANNDIIDKLVAEL

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

Organism=Escherichia coli, GI1790174, Length=156, Percent_Identity=62.8205128205128, Blast_Score=188, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_ACTP2 (A3N2U8)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054339.1
- ProteinModelPortal:   A3N2U8
- STRING:   A3N2U8
- GeneID:   4850234
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1650
- eggNOG:   COG0711
- HOGENOM:   HBG617328
- OMA:   NPGLIFW
- PhylomeDB:   A3N2U8
- ProtClustDB:   PRK05759
- BioCyc:   APLE416269:APL_1650-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146
- InterPro:   IPR005864
- TIGRFAMs:   TIGR01144

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 17219; Mature: 17219

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1ec7177c)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNATLIGQLIAFALFVAFCMKFVWPPLIKAIEERQANIANALASAEKAKQEQADSKAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQEILKAKEEAQKIIDLATKRRNEILETVQAEAEIERQRIIEQGHAEVESERKRVQEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQKVAALAVAGAEKIVGCSVDQAANNDIIDKLVAEL
HHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH
>Mature Secondary Structure
MNLNATLIGQLIAFALFVAFCMKFVWPPLIKAIEERQANIANALASAEKAKQEQADSKAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQEILKAKEEAQKIIDLATKRRNEILETVQAEAEIERQRIIEQGHAEVESERKRVQEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQKVAALAVAGAEKIVGCSVDQAANNDIIDKLVAEL
HHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA