Click here to switch to the map view.

The map label for this gene is ccmH [H]

Identifier: 126208980

GI number: 126208980

Start: 1732016

End: 1732930

Strand: Direct

Name: ccmH [H]

Synonym: APL_1516

Alternate gene names: 126208980

Gene position: 1732016-1732930 (Clockwise)

Preceding gene: 126208979

Following gene: 126208981

Centisome position: 76.15

GC content: 41.86

Gene sequence:

>915_bases
ATGAATTTTTGGATCATTATTGCGCTGATTACCATCGTCATCTGCTTTATTGCTTTCTATCCGTTATTAAAAAAGACCGC
CAAAAGCGACTCGACCAAACGCGACAGTTTAAATAAAGCCTTCTATTTGGATCGTTTAAAAGAAGTCGAACGTGAAGCGA
ATGAAGGGGTGATTGACGACCCTGAAAAAACCAAATTGGAACTTCAACAAAGTTTATTAGACGATATTCCCGAGCAAGCA
CAGACGCAACAAGCGCAACAAACTAAATCGGGTAAAGTTTTGTTTGTCGGTCTATTGTTAGCAGTGGGCGCTATCGGTAC
CGCCGCTTATGTTAGCGTCGGTTCGTGGCAAGCCGGTAATATGATTGATATGACTCATAAGAAATTAGAATATTTTTATG
AGCGTATTAAAGATGAAGACACCAATCCGCTATCCGAACAAGAGCTAAATCAATTTGCGATGGCATTACGCGTCGAATTA
CAAAATAAACCGAATGATGCCAAAGGCTGGTTTATGTTAGGTCAAATCGGCATGGCGAAAGATGACGGGCAATTAGCACT
GGAAAGCTACGAAAAAGCCAGCAAACTGGACCCGAAAAATCTGCAATATAAAGGCAGCTACGCTCAAGTGCTGATGTTCT
CGCAAGATCAAGCGGATAAGGACAGAGGTAAAGCGGTGCTAAAAGAAATTTTACGTGAAGATCATACCAATTTAGATGCG
CTCAGCTTACTGGCTTTCAGTTCTTTTGAAGAACAAGACTATAAAATGGCGGCAATGACTTGGGGCATGATGCTAAAACT
GATTCCTGAAGGCGAACCGCGCCGCGCTACGGTAGAAAAAAGTATCAATATGGCAATGTCGATGTTGCAAGAGCAAGAAA
GCAAACAACCGGCTAAAGCGGAAGAGAAAAAATAA

Upstream 100 bases:

>100_bases
AATCCAAAGCGAAACAAGCGGTTAAATCCGAACAAAATTCTGCAAAGGCAGAGATTGATCAAGCACGTTTAAATCAAATT
CTTAACAATAAGGACGACTA

Downstream 100 bases:

>100_bases
TAACATTTTAGCGAACTAAAAACTGATTCGGGCGGGTTTATACCCGCCCTAAAATTGCAAAAGGATAAATAATGTTAAGT
AAAGAGACATTAAAAATCGG

Product: cytochrome c biogenesis factor-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNFWIIIALITIVICFIAFYPLLKKTAKSDSTKRDSLNKAFYLDRLKEVEREANEGVIDDPEKTKLELQQSLLDDIPEQA
QTQQAQQTKSGKVLFVGLLLAVGAIGTAAYVSVGSWQAGNMIDMTHKKLEYFYERIKDEDTNPLSEQELNQFAMALRVEL
QNKPNDAKGWFMLGQIGMAKDDGQLALESYEKASKLDPKNLQYKGSYAQVLMFSQDQADKDRGKAVLKEILREDHTNLDA
LSLLAFSSFEEQDYKMAAMTWGMMLKLIPEGEPRRATVEKSINMAMSMLQEQESKQPAKAEEKK

Sequences:

>Translated_304_residues
MNFWIIIALITIVICFIAFYPLLKKTAKSDSTKRDSLNKAFYLDRLKEVEREANEGVIDDPEKTKLELQQSLLDDIPEQA
QTQQAQQTKSGKVLFVGLLLAVGAIGTAAYVSVGSWQAGNMIDMTHKKLEYFYERIKDEDTNPLSEQELNQFAMALRVEL
QNKPNDAKGWFMLGQIGMAKDDGQLALESYEKASKLDPKNLQYKGSYAQVLMFSQDQADKDRGKAVLKEILREDHTNLDA
LSLLAFSSFEEQDYKMAAMTWGMMLKLIPEGEPRRATVEKSINMAMSMLQEQESKQPAKAEEKK
>Mature_304_residues
MNFWIIIALITIVICFIAFYPLLKKTAKSDSTKRDSLNKAFYLDRLKEVEREANEGVIDDPEKTKLELQQSLLDDIPEQA
QTQQAQQTKSGKVLFVGLLLAVGAIGTAAYVSVGSWQAGNMIDMTHKKLEYFYERIKDEDTNPLSEQELNQFAMALRVEL
QNKPNDAKGWFMLGQIGMAKDDGQLALESYEKASKLDPKNLQYKGSYAQVLMFSQDQADKDRGKAVLKEILREDHTNLDA
LSLLAFSSFEEQDYKMAAMTWGMMLKLIPEGEPRRATVEKSINMAMSMLQEQESKQPAKAEEKK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=207, Percent_Identity=35.2657004830918, Blast_Score=153, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 34468; Mature: 34468

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFWIIIALITIVICFIAFYPLLKKTAKSDSTKRDSLNKAFYLDRLKEVEREANEGVIDD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEKTKLELQQSLLDDIPEQAQTQQAQQTKSGKVLFVGLLLAVGAIGTAAYVSVGSWQAGN
CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
MIDMTHKKLEYFYERIKDEDTNPLSEQELNQFAMALRVELQNKPNDAKGWFMLGQIGMAK
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
DDGQLALESYEKASKLDPKNLQYKGSYAQVLMFSQDQADKDRGKAVLKEILREDHTNLDA
CCCHHHHHHHHHHHCCCCCCCEECCCHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHH
LSLLAFSSFEEQDYKMAAMTWGMMLKLIPEGEPRRATVEKSINMAMSMLQEQESKQPAKA
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
EEKK
CCCC
>Mature Secondary Structure
MNFWIIIALITIVICFIAFYPLLKKTAKSDSTKRDSLNKAFYLDRLKEVEREANEGVIDD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEKTKLELQQSLLDDIPEQAQTQQAQQTKSGKVLFVGLLLAVGAIGTAAYVSVGSWQAGN
CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
MIDMTHKKLEYFYERIKDEDTNPLSEQELNQFAMALRVELQNKPNDAKGWFMLGQIGMAK
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
DDGQLALESYEKASKLDPKNLQYKGSYAQVLMFSQDQADKDRGKAVLKEILREDHTNLDA
CCCHHHHHHHHHHHCCCCCCCEECCCHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHH
LSLLAFSSFEEQDYKMAAMTWGMMLKLIPEGEPRRATVEKSINMAMSMLQEQESKQPAKA
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
EEKK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]