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The map label for this gene is ccmH [H]

Identifier: 126208979

GI number: 126208979

Start: 1731549

End: 1732016

Strand: Direct

Name: ccmH [H]

Synonym: APL_1515

Alternate gene names: 126208979

Gene position: 1731549-1732016 (Clockwise)

Preceding gene: 126208978

Following gene: 126208980

Centisome position: 76.13

GC content: 41.67

Gene sequence:

>468_bases
ATGAAAAAATTTCTCTCTCTTTTTATATTTGCAACAACCGTGGTAAACGCCGCACCTATTGAGGTTAATCAATTCGATTC
GGCACAACAAGAATCGGATTATCATGCGTTAATCCAAGAGCTGCGTTGTCCGCAATGTCAGAATAATAATATCGCCGATT
CTAACGCTACCATCGCGACAGATATGCGCTTCAAAACCTTGGAACTGCTTAAACAGGGTAAAAGTAAAAATGAAGTGGTG
GATTATATGATTGAGCGTTACGGTAACTTCGTGACGTATGATCCGCCGCTGACACCGGCAACCGTGTTACTTTGGGCGTT
ACCGGTAGCGTTGTTATTGCTCGGCTTCGGTTTAATTTGGGGACGTAAATCCAAAGCGAAACAAGCGGTTAAATCCGAAC
AAAATTCTGCAAAGGCAGAGATTGATCAAGCACGTTTAAATCAAATTCTTAACAATAAGGACGACTAA

Upstream 100 bases:

>100_bases
GGCAACGGCGTCATTCATTACCGCCACGCCGGCGATGTAAACGATCAAGTATGGAATCAAGTATTAAAACCGATTTATGA
AAAACTTAAACAGTAACAGT

Downstream 100 bases:

>100_bases
TGAATTTTTGGATCATTATTGCGCTGATTACCATCGTCATCTGCTTTATTGCTTTCTATCCGTTATTAAAAAAGACCGCC
AAAAGCGACTCGACCAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKKFLSLFIFATTVVNAAPIEVNQFDSAQQESDYHALIQELRCPQCQNNNIADSNATIATDMRFKTLELLKQGKSKNEVV
DYMIERYGNFVTYDPPLTPATVLLWALPVALLLLGFGLIWGRKSKAKQAVKSEQNSAKAEIDQARLNQILNNKDD

Sequences:

>Translated_155_residues
MKKFLSLFIFATTVVNAAPIEVNQFDSAQQESDYHALIQELRCPQCQNNNIADSNATIATDMRFKTLELLKQGKSKNEVV
DYMIERYGNFVTYDPPLTPATVLLWALPVALLLLGFGLIWGRKSKAKQAVKSEQNSAKAEIDQARLNQILNNKDD
>Mature_155_residues
MKKFLSLFIFATTVVNAAPIEVNQFDSAQQESDYHALIQELRCPQCQNNNIADSNATIATDMRFKTLELLKQGKSKNEVV
DYMIERYGNFVTYDPPLTPATVLLWALPVALLLLGFGLIWGRKSKAKQAVKSEQNSAKAEIDQARLNQILNNKDD

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=120, Percent_Identity=54.1666666666667, Blast_Score=143, Evalue=5e-36,
Organism=Escherichia coli, GI1790512, Length=90, Percent_Identity=41.1111111111111, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17435; Mature: 17435

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLSLFIFATTVVNAAPIEVNQFDSAQQESDYHALIQELRCPQCQNNNIADSNATIAT
CHHHHHHHHHHHHHHCCCCCCCHHCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEEEH
DMRFKTLELLKQGKSKNEVVDYMIERYGNFVTYDPPLTPATVLLWALPVALLLLGFGLIW
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
GRKSKAKQAVKSEQNSAKAEIDQARLNQILNNKDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKFLSLFIFATTVVNAAPIEVNQFDSAQQESDYHALIQELRCPQCQNNNIADSNATIAT
CHHHHHHHHHHHHHHCCCCCCCHHCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEEEH
DMRFKTLELLKQGKSKNEVVDYMIERYGNFVTYDPPLTPATVLLWALPVALLLLGFGLIW
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
GRKSKAKQAVKSEQNSAKAEIDQARLNQILNNKDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]