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The map label for this gene is wcaJ [C]

Identifier: 126208935

GI number: 126208935

Start: 1683164

End: 1684582

Strand: Direct

Name: wcaJ [C]

Synonym: APL_1471

Alternate gene names: 126208935

Gene position: 1683164-1684582 (Clockwise)

Preceding gene: 126208934

Following gene: 126208936

Centisome position: 74.0

GC content: 33.83

Gene sequence:

>1419_bases
ATGAAAAAGCAGACGTTATGTAAATATATTCTTGCATTTACTGATTTCTTACTATTTTATTTTTCTTTTTTATTGTCCTT
AGAATTTTTAAACTTATGGACAGGGGATTTGAATCAATATTTTCCAACGGAACAGATTAATGATAGATTATTAATTCATT
TATTTCTTGGTATTGTATGCGTATCTTGGTTTGCGCTTAGACTAAGACATTATACCTACCGAAAACCTTTTTGGTTTGAA
TTAAAGGAAATAATTAGAACATTGGCTATTTTGGCTATTGTTGAGTTGGCGACTATCGCATTTTCTAAACTTTATTTTTC
TCGTTATTTATGGGTATTAACGTGGTCTATTTCTTTAATACTCGTGCCTTTAGGACGTATTCTTGTTAAAAATTATTTGA
TTAGAACTAAATTATATTTGAAAGATACGATTATTATTGGTGGCGGTAAAAATGCCATAGATGCTTATCATGCACTGGTA
AGTGAACCTTATTTAGGTTTTAGAGTAAAATATTTCGTTGCTTTGGATAAACATCCTGATTTAGATAAGTTAGGTATACC
GGTTATTAATGAAACTCGTCAGAGTTTATGGGAATTGGTTACGAAGAAGTCCGATCAATTTATTATTGCTTTGGAAGATT
ATGAAAATGATCAACGAGATAGTTGGCTAAGACATTTATCTAAACAATGTTATCGTTCGGTTTCGGTTATTCCTACTTTA
CGAGGTTTGCCGTTATATAGTACGGATATGTCGTTTTTGTTTAGTTATGAGGTGATGTTATTACGTGTCAATAATAACTT
AGCTAAACGATCTTCGAGGGTATTGAAACGTACTATGGATATTGTCGGTTCTATCTTATTAATTATTTTAACATCGCCTA
TTTTAATCTGGCTTTATTTTGCGATTAAGCAAGATGGTGGAAATGCTATTTATGGTCATCTGCGCATAGGAAAAAACGGT
AAACCGTTTAAATGTTTAAAATTTCGTTCTATGGTAGTCAATTCGGATCAGGTATTACATGATTTGCTTGCTTGTGATGA
AGTTGCAAAGGCGGAATGGGAAAAAGATTTTAAATTGAAGAATGATCCTCGAGTGACGAAAATAGGCGCTTTTATTCGCC
AAACCAGTTTAGACGAATTACCGCAATTATTTAATGTTTTGGTCGGGCAGATGAGTTTGGTCGGTCCTCGCCCGGTAGTT
TCTGATGAATTAGCGTATTATAAAGATAATTTGGATTATTATCTAATGGTGAAACCGGGTATGACCGGGTTATGGCAAGT
AAGCGGTCGTAACGATGTGGACTATGATACGCGTGTTTATTTTGATTCTTGGTATGTGAAAAACTGGTCATTATGGAACG
ATATTGCGATTCTTTTTAAAACAATTACCGCGGTGCGCAAGCGAGCGGGGGCTTATTAA

Upstream 100 bases:

>100_bases
GGTTGTATCTCTGGAAAAAGAAAAAATACTTTTTAAAGTTATAGGACTTTTAAAGAGAAAATTCTCACGAAAGATTAAAT
AAGAGACTAGGGATATTAGA

Downstream 100 bases:

>100_bases
AATGCAAGGGCGGAAAGAGTTTCTTTCTGCTTTTTTATTGTCTTGATAGAATAAAAGCTTCTTTTCAATTAGGTATCGGC
TTATGAAAACTATCTTTATT

Product: putative sugar transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MKKQTLCKYILAFTDFLLFYFSFLLSLEFLNLWTGDLNQYFPTEQINDRLLIHLFLGIVCVSWFALRLRHYTYRKPFWFE
LKEIIRTLAILAIVELATIAFSKLYFSRYLWVLTWSISLILVPLGRILVKNYLIRTKLYLKDTIIIGGGKNAIDAYHALV
SEPYLGFRVKYFVALDKHPDLDKLGIPVINETRQSLWELVTKKSDQFIIALEDYENDQRDSWLRHLSKQCYRSVSVIPTL
RGLPLYSTDMSFLFSYEVMLLRVNNNLAKRSSRVLKRTMDIVGSILLIILTSPILIWLYFAIKQDGGNAIYGHLRIGKNG
KPFKCLKFRSMVVNSDQVLHDLLACDEVAKAEWEKDFKLKNDPRVTKIGAFIRQTSLDELPQLFNVLVGQMSLVGPRPVV
SDELAYYKDNLDYYLMVKPGMTGLWQVSGRNDVDYDTRVYFDSWYVKNWSLWNDIAILFKTITAVRKRAGAY

Sequences:

>Translated_472_residues
MKKQTLCKYILAFTDFLLFYFSFLLSLEFLNLWTGDLNQYFPTEQINDRLLIHLFLGIVCVSWFALRLRHYTYRKPFWFE
LKEIIRTLAILAIVELATIAFSKLYFSRYLWVLTWSISLILVPLGRILVKNYLIRTKLYLKDTIIIGGGKNAIDAYHALV
SEPYLGFRVKYFVALDKHPDLDKLGIPVINETRQSLWELVTKKSDQFIIALEDYENDQRDSWLRHLSKQCYRSVSVIPTL
RGLPLYSTDMSFLFSYEVMLLRVNNNLAKRSSRVLKRTMDIVGSILLIILTSPILIWLYFAIKQDGGNAIYGHLRIGKNG
KPFKCLKFRSMVVNSDQVLHDLLACDEVAKAEWEKDFKLKNDPRVTKIGAFIRQTSLDELPQLFNVLVGQMSLVGPRPVV
SDELAYYKDNLDYYLMVKPGMTGLWQVSGRNDVDYDTRVYFDSWYVKNWSLWNDIAILFKTITAVRKRAGAY
>Mature_472_residues
MKKQTLCKYILAFTDFLLFYFSFLLSLEFLNLWTGDLNQYFPTEQINDRLLIHLFLGIVCVSWFALRLRHYTYRKPFWFE
LKEIIRTLAILAIVELATIAFSKLYFSRYLWVLTWSISLILVPLGRILVKNYLIRTKLYLKDTIIIGGGKNAIDAYHALV
SEPYLGFRVKYFVALDKHPDLDKLGIPVINETRQSLWELVTKKSDQFIIALEDYENDQRDSWLRHLSKQCYRSVSVIPTL
RGLPLYSTDMSFLFSYEVMLLRVNNNLAKRSSRVLKRTMDIVGSILLIILTSPILIWLYFAIKQDGGNAIYGHLRIGKNG
KPFKCLKFRSMVVNSDQVLHDLLACDEVAKAEWEKDFKLKNDPRVTKIGAFIRQTSLDELPQLFNVLVGQMSLVGPRPVV
SDELAYYKDNLDYYLMVKPGMTGLWQVSGRNDVDYDTRVYFDSWYVKNWSLWNDIAILFKTITAVRKRAGAY

Specific function: May function as a sugar transferase [H]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=201, Percent_Identity=42.7860696517413, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362
- InterPro:   IPR017475
- InterPro:   IPR017472 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 55080; Mature: 55080

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQTLCKYILAFTDFLLFYFSFLLSLEFLNLWTGDLNQYFPTEQINDRLLIHLFLGIVC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHH
VSWFALRLRHYTYRKPFWFELKEIIRTLAILAIVELATIAFSKLYFSRYLWVLTWSISLI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVPLGRILVKNYLIRTKLYLKDTIIIGGGKNAIDAYHALVSEPYLGFRVKYFVALDKHPD
HHHHHHHHHHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
LDKLGIPVINETRQSLWELVTKKSDQFIIALEDYENDQRDSWLRHLSKQCYRSVSVIPTL
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
RGLPLYSTDMSFLFSYEVMLLRVNNNLAKRSSRVLKRTMDIVGSILLIILTSPILIWLYF
CCCCCCCCCHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIKQDGGNAIYGHLRIGKNGKPFKCLKFRSMVVNSDQVLHDLLACDEVAKAEWEKDFKLK
HHEECCCCEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
NDPRVTKIGAFIRQTSLDELPQLFNVLVGQMSLVGPRPVVSDELAYYKDNLDYYLMVKPG
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCC
MTGLWQVSGRNDVDYDTRVYFDSWYVKNWSLWNDIAILFKTITAVRKRAGAY
CCEEEEECCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKQTLCKYILAFTDFLLFYFSFLLSLEFLNLWTGDLNQYFPTEQINDRLLIHLFLGIVC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHH
VSWFALRLRHYTYRKPFWFELKEIIRTLAILAIVELATIAFSKLYFSRYLWVLTWSISLI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVPLGRILVKNYLIRTKLYLKDTIIIGGGKNAIDAYHALVSEPYLGFRVKYFVALDKHPD
HHHHHHHHHHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
LDKLGIPVINETRQSLWELVTKKSDQFIIALEDYENDQRDSWLRHLSKQCYRSVSVIPTL
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
RGLPLYSTDMSFLFSYEVMLLRVNNNLAKRSSRVLKRTMDIVGSILLIILTSPILIWLYF
CCCCCCCCCHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIKQDGGNAIYGHLRIGKNGKPFKCLKFRSMVVNSDQVLHDLLACDEVAKAEWEKDFKLK
HHEECCCCEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
NDPRVTKIGAFIRQTSLDELPQLFNVLVGQMSLVGPRPVVSDELAYYKDNLDYYLMVKPG
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCC
MTGLWQVSGRNDVDYDTRVYFDSWYVKNWSLWNDIAILFKTITAVRKRAGAY
CCEEEEECCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]