Click here to switch to the map view.

The map label for this gene is ubiD [H]

Identifier: 126208903

GI number: 126208903

Start: 1645551

End: 1647014

Strand: Reverse

Name: ubiD [H]

Synonym: APL_1439

Alternate gene names: 126208903

Gene position: 1647014-1645551 (Counterclockwise)

Preceding gene: 126208905

Following gene: 126208902

Centisome position: 72.41

GC content: 45.9

Gene sequence:

>1464_bases
ATGAAATACAAAGATTTACGTGAATTTTTAACATTACTGGAAGGCCAAGGCGAACTGGTTCGTATAAAACAAGAGATCGA
TCCTTATCTTGAAATGGCGGAAATTTCCGACCGCACTTTACGTAAGGGCGGGCCGGCGATTTTATTTGAAAACCCGAAAG
GCTACCGAATGCCGGTGCTGTGTAATTTATTCGGCACGCCGAAACGTGTCGCATTAGGTATGGGGCAAGAAGATACGCAC
GCCTTACGAGAGCTGGGGAAATTATTAGCGTTTCTCAAAGAGCCTGAACCGCCAAAAGGTTTTAAAGAGCTGATCGGGCA
ACTGCCGCAATGGAAACAAGTGCTGAATATGCCAAGCAAAGTGTTGGGTAAAGCGGATTGTCAACAAGTGGTATTAAGCG
GTGATGAAGTGGAACTGTATAAATTACCGATTATGCATTGCCACGAAGGTGATGTTGCACCGCTCGTTGCTTGGGGATTA
ACTATTACCCAAGGGCCTTATAAAAAACGCCAAAATCTTGGCATTTATCGCCAACAACTTATAGGTAAAAACAAGCTGAT
TATGCGTTGGTTATCGCATCGTGGCGGTGCGTTGGATTTTCACGAATGGAAAGAAGCTAATCCGGATAAACCGTTTCCGG
TTTCGGTGGCTATCGGTGCCGATCCGGCAACCATTTTAGCAGCAGTCACGCCGATTCCCGATACCTTATCGGAATATGCG
TTCGCCGGCTTATTACGCGGTCAGAAAACTGAGGTAACCAAGTCAATCAGTAATGATTTGGAAGTACCGGCAAGTGCGGA
AATTGTGCTGGAGGGCTATATTGACCCGAATGAAACCGCACTGGAAGGTCCGTACGGCGATCATACTGGCTATTACAATG
AGCAAGAGTATTTTCCGGTATTTACCGTAACGCATATCACGATGCGCCGTGATGCGATTTATCACTCAACTTACACCGGT
CGTCCACCGGATGAGCCGGCAGTCCTCGGCGAAGCGTTAAATGAAGTGTTTATTCCGATTTTGCAAAAGCAATTTCCGGA
AATTGTGGACTTCTATCTACCGCCGGAAGGTTGTTCTTACCGTCTTGCGGTAGTGACGATTAAGAAACAATATGCCGGCC
ATGCAAAACGGGTGATGATGGGTGTTTGGTCATTTCTCCGACAATTTATGTACACCAAATTTGTGATTGTTTGCGATGAC
GACGTAAACGCCAGAGACTGGAAAGACGTGATTTGGGCGATTACTACACGTTGTGACCCGAGCCGAGATACGACTTTAAT
CGATCATACACCGATTGATTATCTGGATTTCGCTTCACCGATTGCGGGCTTAGGCTCAAAAATGGGGATTGACGCAACCA
ATAAATGGCCGGGCGAAACCAGCCGTGAATGGGGTACACCGATTAAAAAAGATCCGAATGTTGTTAAACGTGTTGATGAA
ATTTGGGATCAATTAGGGCTATAA

Upstream 100 bases:

>100_bases
TATGAAATTATCATACACTTTCTCATAATTTTTTTATGGGTATTTTTCATTGATTGTTTTCTATATACTAGCGGTCGAAT
TTTTCTGATTTTTTACCTAT

Downstream 100 bases:

>100_bases
CTTTAACAATACGGTGAAAAGTTCGCTGAAACTGACAAGAGCAAGCGGTTAAATTTCCTTAAAAATTTACCAAATAAAAA
CAGCTTATTTCAGCAGCTTT

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKYKDLREFLTLLEGQGELVRIKQEIDPYLEMAEISDRTLRKGGPAILFENPKGYRMPVLCNLFGTPKRVALGMGQEDTH
ALRELGKLLAFLKEPEPPKGFKELIGQLPQWKQVLNMPSKVLGKADCQQVVLSGDEVELYKLPIMHCHEGDVAPLVAWGL
TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFHEWKEANPDKPFPVSVAIGADPATILAAVTPIPDTLSEYA
FAGLLRGQKTEVTKSISNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRRDAIYHSTYTG
RPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAITTRCDPSRDTTLIDHTPIDYLDFASPIAGLGSKMGIDATNKWPGETSREWGTPIKKDPNVVKRVDE
IWDQLGL

Sequences:

>Translated_487_residues
MKYKDLREFLTLLEGQGELVRIKQEIDPYLEMAEISDRTLRKGGPAILFENPKGYRMPVLCNLFGTPKRVALGMGQEDTH
ALRELGKLLAFLKEPEPPKGFKELIGQLPQWKQVLNMPSKVLGKADCQQVVLSGDEVELYKLPIMHCHEGDVAPLVAWGL
TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFHEWKEANPDKPFPVSVAIGADPATILAAVTPIPDTLSEYA
FAGLLRGQKTEVTKSISNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRRDAIYHSTYTG
RPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAITTRCDPSRDTTLIDHTPIDYLDFASPIAGLGSKMGIDATNKWPGETSREWGTPIKKDPNVVKRVDE
IWDQLGL
>Mature_487_residues
MKYKDLREFLTLLEGQGELVRIKQEIDPYLEMAEISDRTLRKGGPAILFENPKGYRMPVLCNLFGTPKRVALGMGQEDTH
ALRELGKLLAFLKEPEPPKGFKELIGQLPQWKQVLNMPSKVLGKADCQQVVLSGDEVELYKLPIMHCHEGDVAPLVAWGL
TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFHEWKEANPDKPFPVSVAIGADPATILAAVTPIPDTLSEYA
FAGLLRGQKTEVTKSISNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRRDAIYHSTYTG
RPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAITTRCDPSRDTTLIDHTPIDYLDFASPIAGLGSKMGIDATNKWPGETSREWGTPIKKDPNVVKRVDE
IWDQLGL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=80.6981519507187, Blast_Score=829, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=438, Percent_Identity=27.3972602739726, Blast_Score=141, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 54949; Mature: 54949

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKDLREFLTLLEGQGELVRIKQEIDPYLEMAEISDRTLRKGGPAILFENPKGYRMPVL
CCHHHHHHHHHHHCCCCCEEEEHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEE
CNLFGTPKRVALGMGQEDTHALRELGKLLAFLKEPEPPKGFKELIGQLPQWKQVLNMPSK
EECCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHCCCHH
VLGKADCQQVVLSGDEVELYKLPIMHCHEGDVAPLVAWGLTITQGPYKKRQNLGIYRQQL
HHCHHHHHHHHHCCCCEEEEEECEEEECCCCCHHHHHHCCEECCCCHHHHHCCHHHHHHH
IGKNKLIMRWLSHRGGALDFHEWKEANPDKPFPVSVAIGADPATILAAVTPIPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHEEECCCCHHHHHHH
FAGLLRGQKTEVTKSISNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
FTVTHITMRRDAIYHSTYTGRPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSY
EEEEEEHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
RLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAITTRCDP
EEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC
SRDTTLIDHTPIDYLDFASPIAGLGSKMGIDATNKWPGETSREWGTPIKKDPNVVKRVDE
CCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHH
IWDQLGL
HHHHHCC
>Mature Secondary Structure
MKYKDLREFLTLLEGQGELVRIKQEIDPYLEMAEISDRTLRKGGPAILFENPKGYRMPVL
CCHHHHHHHHHHHCCCCCEEEEHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEE
CNLFGTPKRVALGMGQEDTHALRELGKLLAFLKEPEPPKGFKELIGQLPQWKQVLNMPSK
EECCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHCCCHH
VLGKADCQQVVLSGDEVELYKLPIMHCHEGDVAPLVAWGLTITQGPYKKRQNLGIYRQQL
HHCHHHHHHHHHCCCCEEEEEECEEEECCCCCHHHHHHCCEECCCCHHHHHCCHHHHHHH
IGKNKLIMRWLSHRGGALDFHEWKEANPDKPFPVSVAIGADPATILAAVTPIPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHEEECCCCHHHHHHH
FAGLLRGQKTEVTKSISNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
FTVTHITMRRDAIYHSTYTGRPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSY
EEEEEEHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
RLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAITTRCDP
EEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC
SRDTTLIDHTPIDYLDFASPIAGLGSKMGIDATNKWPGETSREWGTPIKKDPNVVKRVDE
CCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHH
IWDQLGL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA